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Sample GSM337670 Query DataSets for GSM337670
Status Public on Nov 14, 2008
Title HCC1143BL_GHATS_H09
Sample type genomic
 
Source name human peripheral blood
Organism Homo sapiens
Characteristics EBV-transformed lymphoblastoid cell line with gain of chromosome 11
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
 
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_H09_160228
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
 
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
E-mail(s) chiang@med.unc.edu
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
 
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
ID_REF
VALUE copy number inferred after correction with the 5 closest normals

Data table
ID_REF VALUE
CN_473963 3.040
CN_473964 2.503
CN_473965 2.718
CN_477984 1.393
CN_473981 3.371
CN_473982 1.718
CN_497980 1.197
CN_497981 1.019
CN_513369 1.143
CN_513370 1.733
CN_517762 2.905
CN_517763 1.563
CN_502615 1.433
CN_502613 1.095
CN_502614 1.460
CN_502616 2.798
CN_502842 2.149
CN_502843 2.243
CN_466171 1.301
CN_466172 1.318

Total number of rows: 1851810

Table truncated, full table size 32799 Kbytes.




Supplementary file Size Download File type/resource
GSM337670.CEL.gz 30.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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