|
| Status |
Public on Nov 08, 2008 |
| Title |
Ag-S-CEN.PK-1N-A-g297-c1-PFGband |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
9500a (Strain Name : CEN.PK haploid)
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
Strain Name : CEN.PK haploid
|
| Biomaterial provider |
Cheryl Christianson, Dunham Lab, Princeton University
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extracted molecule : Genomic DNA
Extraction method : reference genomic DNA http://genomics.princeton.edu/dunham/MDPFGEarrays.pdf
|
| Label |
Cy3
|
| Label protocol |
reference URL : http://genomics.princeton.edu/dunham/MDPFGEarrays.pdf
|
| |
|
| Channel 2 |
| Source name |
10250 gel band (Strain Name : S5 c1)
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
Strain Name : S5 c1
|
| Biomaterial provider |
Cheryl Christianson, Dunham Lab, Princeton University
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extracted molecule : Genomic DNA
Extraction method : PFGE band http://genomics.princeton.edu/dunham/MDPFGEarrays.pdf
|
| Label |
Cy5
|
| Label protocol |
reference URL : http://genomics.princeton.edu/dunham/MDPFGEarrays.pdf
|
| |
|
| |
| Hybridization protocol |
reference URL : http://genomics.princeton.edu/dunham/MDPFGEarrays.pdf
|
| Scan protocol |
Pixel Size : 5
Scan Date : 2007-07-13
Scan Time : 10:41:56
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
|
| Description |
Experiment design: Chromosomes from evolved strains were run on a gel and excised. DNA from the bands is hybridized vs matched ancestor genomic DNA
Complete protocols also available as supplementary files on the Series record
|
| Data processing |
Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.5.1.1
Datafile type : Agilent result file
|
| |
|
| Submission date |
Nov 03, 2008 |
| Last update date |
Nov 07, 2008 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
maitreya@uw.edu
|
| Phone |
206-543-2338
|
| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Dunham Lab
|
| Street address |
Foege Building, S403B, Box 355065
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
| |
|
| Platform ID |
GPL4131 |
| Series (1) |
| GSE13435 |
The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast |
|
