GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM3457139 Query DataSets for GSM3457139
Status Public on Jan 01, 2020
Title Na2SeO3+CYP rep1
Sample type SRA
Source name liver tissue
Organism Mus musculus
Characteristics treatment: 40mg/kg [beta]-CYP and 50μg/kg Na2SeO3
tissue: liver
strain: Swiss
ages: weeks 10-12
Extracted molecule total RNA
Extraction protocol RNA was harvested using Trizol reagent.TruSeq® RNA LT Sample Prep Kit v2 was used with total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard BGISEQ500 protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
Description gene_exp_with_symbol.txt
processed data column header: f1
Data processing BGISEQ500 platform used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm9 whole genome using HISAT software
Exons from all isoforms of a gene were merged to create one meta-transcript. The number of reads falling in the exons of this meta-transcript were counted and normalized by Cufflinks
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files include the expression values of this transcript for each Sample ..
Submission date Nov 05, 2018
Last update date Jan 01, 2020
Contact name Kan He
Organization name Anhui University
Department School of life sciences
Lab Center for Stem Cell and Translational Medicine
Street address 111 Jiulong Road
City Hefei
State/province Anhui
ZIP/Postal code 230601
Country China
Platform ID GPL21493
Series (1)
GSE122165 A transcriptomic study of selenium against liver injury by RNA-seq
BioSample SAMN10380327
SRA SRX4980109

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap