|
| Status |
Public on Jun 30, 2021 |
| Title |
Rashpanjor Biological Rep 2 (Waterlogging + Salinity) |
| Sample type |
SRA |
| |
|
| Source name |
Leaf Sheath
|
| Organism |
Oryza sativa |
| Characteristics |
cultivar: Rashpanjor
tissue: Leaf Sheath
developmental stage: Max Tillering Stage
treatment: Waterlogging + Salinity
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Using the standard Trizol Method.
RNA libraries were prepared for sequencing using standard Illumina protocols.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Replicate 2
RWS2
|
| Data processing |
The generated data was aligned to the MSU6 genome using TopHat. The resultant bam were subsequently processed by the Cufflinks pipeline.
Genome_build: MSU6
Supplementary_files_format_and_content: .diff files containing the Expression Analyses from Cuffdiff.
|
| |
|
| Submission date |
Jan 03, 2019 |
| Last update date |
Jun 30, 2021 |
| Contact name |
Koushik Chakraborty |
| E-mail(s) |
koushikiari@gmail.com
|
| Organization name |
ICAR-National Rice Research Institute
|
| Street address |
Bidyadharpur
|
| City |
Cuttack |
| ZIP/Postal code |
753006 |
| Country |
India |
| |
|
| Platform ID |
GPL19290 |
| Series (1) |
| GSE124618 |
Preformed aerenchyma determines the differential tolerance response under partial submergence imposed by fresh and saline water flooding in rice |
|
| Relations |
| BioSample |
SAMN10689655 |
| SRA |
SRX5202539 |
