|
Status |
Public on Jun 30, 2021 |
Title |
Rashpanjor Biological Rep 1 (Control) |
Sample type |
SRA |
|
|
Source name |
Leaf Sheath
|
Organism |
Oryza sativa |
Characteristics |
cultivar: Rashpanjor tissue: Leaf Sheath developmental stage: Max Tillering Stage treatment: Control
|
Extracted molecule |
total RNA |
Extraction protocol |
Using the standard Trizol Method. RNA libraries were prepared for sequencing using standard Illumina protocols.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Description |
Replicate 1 RC1
|
Data processing |
The generated data was aligned to the MSU6 genome using TopHat. The resultant bam were subsequently processed by the Cufflinks pipeline. Genome_build: MSU6 Supplementary_files_format_and_content: .diff files containing the Expression Analyses from Cuffdiff.
|
|
|
Submission date |
Jan 03, 2019 |
Last update date |
Jun 30, 2021 |
Contact name |
Koushik Chakraborty |
E-mail(s) |
koushikiari@gmail.com
|
Organization name |
ICAR-National Rice Research Institute
|
Street address |
Bidyadharpur
|
City |
Cuttack |
ZIP/Postal code |
753006 |
Country |
India |
|
|
Platform ID |
GPL19290 |
Series (1) |
GSE124618 |
Preformed aerenchyma determines the differential tolerance response under partial submergence imposed by fresh and saline water flooding in rice |
|
Relations |
BioSample |
SAMN10689651 |
SRA |
SRX5202542 |