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Sample GSM359308 Query DataSets for GSM359308
Status Public on Dec 01, 2009
Title H3K9me3 Yaswen1C RenLab ENCODE PCR tiling array replicate 1 llee_enc_103_H3K9me3_1C_060408.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen1C cells using H3K9me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen1C cells using H3K9me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen1C cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen1C cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.179 0.98 5.360e-01 773.00 790.93 840 871 374 67 76 60 1258 1273 398 383 390 128 0 -0.179
2 -0.150 1.00 5.049e-01 473.00 474.56 538 581 313 65 75 59 909 928 329 384 390 127 0 -0.150
3 0.92 5.170e-01 10.00 10.85 65 74 60 67 76 60 398 399 129 386 393 125 -50 0
4 1.11 4.806e-01 10.00 9.04 63 75 59 64 72 56 375 394 129 386 392 125 -50 -3.459
5 -0.170 0.98 5.264e-01 784.00 797.26 849 898 377 65 75 59 1259 1267 392 377 383 123 0 -0.170
6 -0.068 1.05 4.150e-01 1893.00 1794.28 1956 1942 825 63 73 57 2365 2322 752 380 385 120 0 -0.068
7 -0.046 1.07 3.921e-01 1622.00 1514.07 1687 1664 739 65 73 57 2062 2082 686 387 393 125 0 -0.046
8 -0.334 0.88 6.960e-01 691.00 787.32 757 812 335 66 75 57 1255 1300 387 384 391 125 0 -0.334
9 -0.282 0.91 6.499e-01 1141.00 1253.74 1206 1267 407 65 76 58 1769 1764 419 382 386 126 0 -0.282
10 -0.108 1.03 4.569e-01 1679.00 1635.19 1744 1815 589 65 75 58 2191 2216 552 382 391 126 0 -0.108
11 1.11 4.792e-01 10.00 9.04 63 71 55 66 75 57 373 370 120 378 386 122 -50 -0.737
12 -0.714 0.67 9.334e-01 503.00 745.73 567 608 274 64 74 57 1200 1225 353 375 383 121 0 -0.714
13 0.272 1.34 1.252e-01 1392.00 1042.22 1457 1405 533 65 73 57 1535 1518 446 382 390 121 0 0.272
14 -0.957 0.57 9.851e-01 894.00 1568.30 960 949 341 66 74 57 2121 2097 471 386 392 121 0 -0.957
15 0.211 1.28 1.572e-01 1344.00 1049.45 1410 1408 388 66 75 58 1546 1574 376 385 390 123 0 0.211
16 -0.082 1.05 4.274e-01 1589.00 1520.39 1654 1687 455 65 75 59 2068 2042 409 386 390 124 0 -0.082
17 -0.446 0.81 8.010e-01 939.00 1156.11 1002 1023 297 63 73 57 1667 1665 404 388 391 120 0 -0.446
18 -0.816 0.63 9.650e-01 617.00 981.66 680 689 246 63 72 56 1474 1479 344 388 393 122 0 -0.816
19 0.85 5.363e-01 10.00 11.75 63 73 55 62 70 54 401 399 126 388 395 125 -50 -3.700
20 -1.083 0.52 9.928e-01 915.00 1752.70 978 975 362 63 71 55 2323 2317 601 384 393 125 0 -1.083

Total number of rows: 25246

Table truncated, full table size 2371 Kbytes.




Supplementary file Size Download File type/resource
GSM359308.gpr.gz 2.5 Mb (ftp)(http) GPR
Processed data included within Sample table
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