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Sample GSM359311 Query DataSets for GSM359311
Status Public on Dec 01, 2009
Title H3K9me3 Yaswen2C RenLab ENCODE PCR tiling array replicate 1 llee_enc_104_H3K9me3_2C_060408.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen2C cells using H3K9me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen2C cells using H3K9me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen2C cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen2C cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 0.014 1.09 3.514e-01 1043.00 953.97 1107 1148 564 64 73 56 1380 1424 551 347 357 141 0 0.014
2 -0.063 1.04 4.359e-01 1059.00 1021.39 1123 1164 407 64 72 56 1441 1473 461 335 347 139 0 -0.063
3 1.08 4.850e-01 10.00 9.23 67 76 75 61 67 51 331 344 144 337 351 139 -50 0
4 1.08 4.835e-01 10.00 9.23 63 66 51 62 69 54 340 347 138 338 348 135 -50 -1.000
5 -0.066 1.03 4.398e-01 1390.00 1343.69 1450 1458 511 60 69 55 1784 1798 596 329 337 135 0 -0.066
6 0.180 1.23 1.804e-01 2476.00 2017.84 2537 2428 906 61 69 54 2514 2477 796 329 340 138 0 0.180
7 0.122 1.18 2.340e-01 2409.00 2044.62 2472 2351 1006 63 70 54 2546 2450 902 332 341 139 0 0.122
8 0.037 1.11 3.183e-01 1426.00 1283.66 1486 1471 483 60 68 53 1723 1730 546 333 342 136 0 0.037
9 0.035 1.11 3.187e-01 2064.00 1859.92 2125 2120 686 61 67 52 2345 2352 678 331 340 134 0 0.035
10 0.059 1.13 2.913e-01 2489.00 2207.16 2551 2498 703 62 68 52 2724 2706 679 334 345 139 0 0.059
11 1.08 4.864e-01 10.00 9.23 58 70 69 62 68 53 354 365 166 346 357 140 -50 0
12 -0.504 0.76 8.820e-01 1001.00 1311.37 1063 1129 454 62 68 52 1764 1763 531 344 352 140 0 -0.504
13 0.254 1.29 1.251e-01 1464.00 1134.05 1525 1512 418 61 67 51 1569 1593 421 341 347 136 0 0.254
14 -0.662 0.68 9.556e-01 1299.00 1897.79 1359 1354 343 60 67 51 2390 2409 474 335 345 138 0 -0.662
15 0.160 1.21 1.970e-01 1452.00 1200.55 1513 1529 488 61 67 51 1634 1632 492 334 345 138 0 0.160
16 0.223 1.26 1.447e-01 2328.00 1842.38 2389 2318 667 61 67 52 2337 2329 598 342 347 138 0 0.223
17 -0.232 0.92 6.453e-01 1173.00 1272.58 1236 1223 340 63 73 61 1722 1767 395 344 356 149 0 -0.232
18 -0.739 0.65 9.724e-01 1246.00 1919.95 1310 1340 379 64 75 62 2432 2455 506 353 391 1143 0 -0.739
19 -0.947 0.56 9.442e-01 125.00 222.56 189 227 179 64 75 68 607 663 340 366 402 1073 0 -0.947
20 -1.043 0.53 9.967e-01 1620.00 3081.71 1683 1619 515 63 71 66 3687 3562 953 350 366 212 0 -1.043

Total number of rows: 25246

Table truncated, full table size 2370 Kbytes.




Supplementary file Size Download File type/resource
GSM359311.gpr.gz 2.4 Mb (ftp)(http) GPR
Processed data included within Sample table
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