|
Status |
Public on Jan 01, 2020 |
Title |
Lymphoma, long, 038A_S39 |
Sample type |
SRA |
|
|
Source name |
Lymphoma
|
Organism |
Canis lupus familiaris |
Characteristics |
disease state: Lymphoma immunophenotype: T-Cell survival: long
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen Rneasy RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina MiSeq |
|
|
Description |
038A_S39
|
Data processing |
Reads aligned to CanFam3.1 reference genome with Hisat2 2.1.0 Gene annotation and expression with StringTie 1.3.3 Raw read counts calculated using prepDE .py from Ballgown R package FPKM values calculated using the Ballgown R package Genome_build: CanFam3.1 reference genome Supplementary_files_format_and_content: Tab-delimited text files include either raw read count or FPKM values
|
|
|
Submission date |
May 08, 2019 |
Last update date |
Jan 01, 2020 |
Contact name |
Miles Mee |
E-mail(s) |
miles.william.mee@gmail.com
|
Organization name |
Ontario Institute for Cancer Research
|
Street address |
661 University Ave Suite 510
|
City |
Toronto |
ZIP/Postal code |
M5G 0A3 |
Country |
Canada |
|
|
Platform ID |
GPL22370 |
Series (1) |
GSE130874 |
RNA-Seq analysis of gene expression in 25 cases of canine lymphoma undergoing CHOP chemotherapy |
|
Relations |
BioSample |
SAMN11604177 |
SRA |
SRX5806476 |