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Sample GSM3820360 Query DataSets for GSM3820360
Status Public on May 29, 2019
Title Control retina
Sample type RNA
 
Source name Control
Organism Mus musculus
Characteristics tissue: Retina
strain: C57BL/6J
Extracted molecule total RNA
Extraction protocol Total RNA extraction was performed using the miRNeasy Micro kit (QIAGEN) following the manufacturer's recommendations. RNA was quantified using a NanoDrop-ND1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent).
Label Cy3
Label protocol Cy3 labeled RNA was prepared from 100 ng RNA using the miRNA Complete Labeling and Hyb Kit (Agilent) according to the manufacturer's instructions.
 
Hybridization protocol Cy3-labelled RNA were hybridized Expression Hybridization kit (Agilent) for 22 hour at 55℃ following the manufacturers instructions.
Scan protocol After washed, the microarray were scanned by DNA Microarray Scanner (Agilent)
Data processing The scanning data was digitized using Feature Extraction ver 10.7.1.1 software (Agilent).
 
Submission date May 28, 2019
Last update date May 29, 2019
Contact name Yasuhisa Tanaka
Phone 743794525
Organization name Santen Pharmaceutical CO., LTD
Street address 8916-16
City Takayama-cho Ikoma-shi, Nara
State/province Japan
ZIP/Postal code 630-0101
Country Japan
 
Platform ID GPL21265
Series (1)
GSE131831 Tissue specific comprehensive gene analysis in a murine lens-induced myopia model

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
mmu-let-7a-1-3p 0.1
mmu-let-7a-2-3p 0.1
mmu-let-7a-5p 1610.217
mmu-let-7b-3p 0.1
mmu-let-7b-5p 2102.449
mmu-let-7c-1-3p 0.1
mmu-let-7c-5p 1906.681
mmu-let-7d-3p 0.1
mmu-let-7d-5p 1161.945
mmu-let-7e-3p 0.1
mmu-let-7e-5p 788.599
mmu-let-7f-1-3p 0.1
mmu-let-7f-2-3p 0.1
mmu-let-7f-5p 1134.49
mmu-let-7g-3p 0.1
mmu-let-7g-5p 1600.117
mmu-let-7i-3p 0.1
mmu-let-7i-5p 778.48
mmu-let-7j 0.1
mmu-let-7k 0.1

Total number of rows: 1881

Table truncated, full table size 36 Kbytes.




Supplementary file Size Download File type/resource
GSM3820360_US09503747_257015510440_S01_miRNA_107_Sep09_1_4.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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