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Sample GSM38956 Query DataSets for GSM38956
Status Public on Jan 14, 2006
Title 108c: AEC I- AEC II
Sample type RNA
 
Channel 1
Source name AEC I
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name AEC II
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description Freshly isolated alveolar epithelial cells (AEC) type I and II were monitored for transcriptome with DNA microarray hybridization using 3DNA 50 version 2 kit.
 
Submission date Jan 14, 2005
Last update date May 29, 2005
Contact name Zhongming Chen
E-mail(s) zhongmi@okstate.edu
Phone 405-744-0329
URL http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
Organization name Oklahoma State University
Department Deptment of Physiological Sciences
Lab Lin Liu Lab
Street address 264 McElroy Hall
City Stillwater
State/province OK
ZIP/Postal code 74078
Country USA
 
Platform ID GPL1699
Series (1)
GSE2160 Transcriptomes of Alveolar epithelial cells

Data table header descriptions
ID_REF
X
Y
Dia.
F Pixels
B Pixels
F3 Mean
B3 Mean
F5 Mean
B5 Mean
F3 Mean - B3 CH1 signal: green, background subtracted fluorescence intensity
F5 Mean - B5 CH2 signal: red, background-subtracted fluorescence intensity
F3 SD
B3 SD
B5 SD
F5 SD
F3 Median
F5 Median
F5 Median - B5
F5 Total Intensity
F5 % Sat.
F3 Total Intensity
F3 Median - B3
F3 % Sat.
B5 Median
B3 Median
Sum of Medians
Sum of Means
SNR 5
SNR 3
Rgn R? (5/3)
Rgn Ratio (5/3)
Ratios SD (5/3)
Ratio of Medians (5/3)
Ratio of Means (5/3)
Median of Ratios (5/3)
Mean of Ratios (5/3)
Log Ratio (5/3)
Flags Spot quality from GenePix
% > B5+2SD
% > B5+1SD
% > B3+2SD
% > B3+1SD
VALUE LOWESS normalized log ratio of "F3 mean -B3" vs "F5 mean - B5"
CH1_MEAN Linearly scaled "F3 mean -B3" as: lowest 5% to 0, highest 5% to 255
CH2_MEAN Linearly scaled "F5 mean -B5" as: lowest 5% to 0, highest 5% to 255

Data table
ID_REF X Y Dia. F Pixels B Pixels F3 Mean B3 Mean F5 Mean B5 Mean F3 Mean - B3 F5 Mean - B5 F3 SD B3 SD B5 SD F5 SD F3 Median F5 Median F5 Median - B5 F5 Total Intensity F5 % Sat. F3 Total Intensity F3 Median - B3 F3 % Sat. B5 Median B3 Median Sum of Medians Sum of Means SNR 5 SNR 3 Rgn R? (5/3) Rgn Ratio (5/3) Ratios SD (5/3) Ratio of Medians (5/3) Ratio of Means (5/3) Median of Ratios (5/3) Mean of Ratios (5/3) Log Ratio (5/3) Flags % > B5+2SD % > B5+1SD % > B3+2SD % > B3+1SD VALUE CH1_MEAN CH2_MEAN
AF007818 1190 44560 100 80 458 1462 302 155 104 1272 59 6583 371 31 248 401 99 3 12414 0 116970 211 0 96 190 214 1331 1.645 3.127 0.523 0.023 3.862 0.014 0.046 0.11 0.15 -6.136 -100 15 28 16 32 3.07 181.7 14.64
AF027331 1360 44630 120 120 559 1194 293 183 102 1005 90 6214 290 31 351 395 129 36 22015 0 143278 206 0 93 189 242 1095 2.613 3.107 0.875 0.054 4.563 0.175 0.09 0.223 0.196 -2.517 0 36 55 19 41 2.15 140.76 23.21
AF032925 1550 44630 110 80 446 523 257 171 102 350 79 393 246 33 92 410 143 51 13704 0 41826 237 0 92 173 288 429 2.091 1.081 0.039 0.041 3.027 0.215 0.226 0.176 0.189 -2.216 0 42 63 31 48 0.45 40.33 20.17
AF046886 1720 44630 150 156 699 342 284 111 101 170 20 265 449 41 40 261 101 10 17344 0 53328 89 0 91 172 99 190 0.244 0.129 0.112 0.043 3.458 0.112 0.118 0.145 0.182 -3.154 -50 7 23 1 14 0.35 12.73 3.87
S79292 1910 44640 120 120 599 471 363 164 105 311 72 331 1421 48 86 392 142 50 19682 0 56554 232 0 92 160 282 383 1.229 0.076 0.014 0.015 4.147 0.216 0.232 0.189 0.211 -2.214 0 26 51 0 0 0.31 34.35 18.23
NM_053986 2090 44640 100 80 414 475 399 124 99 315 34 330 2743 37 52 391 109 19 9882 0 38031 231 0 90 160 250 349 0.676 0.028 0.027 0.026 4.386 0.082 0.108 0.15 0.169 -3.604 0 17 32 0 0 1.1 34.96 7.74
NM_019360 2270 44640 140 156 702 1053 427 458 103 889 366 1352 2529 55 221 765 430 338 71498 0 164226 601 0 92 164 939 1255 6.455 0.248 0.201 0.114 2.978 0.562 0.412 0.549 0.524 -0.83 0 91 96 1 2 0.26 122.98 99.46
M35602 2480 44670 80 52 216 1895 317 148 104 1702 52 1543 361 31 80 1391 123 27 7708 0 98535 1198 0 96 193 1225 1754 1.419 4.371 0.059 0.013 3.271 0.023 0.031 0.065 0.067 -5.472 -100 28 48 67 80 3.7 247.64 12.71
M64391 2620 44660 130 120 494 771 238 145 103 625 51 1042 259 33 70 451 131 37 17443 0 92472 305 0 94 146 342 676 1.273 2.058 0.01 0.008 4.044 0.121 0.082 0.268 0.229 -3.043 -100 35 50 39 53 1.96 82.5 12.43
S48142 2800 44670 80 52 251 380 237 114 102 226 20 331 207 30 44 256 101 7 5918 0 19740 102 0 94 154 109 246 0.4 0.691 0 0 4.25 0.069 0.088 0.222 0.229 -3.865 0 17 34 25 40 0.93 21.31 3.87
AB050745 2990 44650 130 120 692 497 269 363 105 343 270 338 449 39 177 473 339 246 43570 0 59597 319 0 93 154 565 613 6.615 0.508 0.041 0.062 3.541 0.771 0.787 0.719 0.858 -0.375 0 90 95 4 30 -0.97 39.25 72.94
NM_030838 3180 44630 90 52 342 504 357 144 103 308 52 380 694 37 61 393 133 41 7502 0 26219 197 0 92 196 238 360 1.108 0.212 0.017 0.018 4.342 0.208 0.169 0.182 0.213 -2.264 0 26 53 1 13 0.63 33.89 12.71
NM_017026 3320 44650 90 52 331 797 351 164 107 579 68 477 451 40 85 747 142 46 8523 0 41454 529 0 96 218 575 647 1.425 0.989 0.039 0.031 3.875 0.087 0.117 0.078 0.09 -3.524 0 30 55 23 57 1.51 75.44 17.13
NM_053295 3510 44660 80 52 308 531 288 120 105 339 26 384 255 35 47 416 112 18 6220 0 27596 224 0 94 192 242 365 0.429 0.953 0.028 0.028 3.827 0.08 0.077 0.124 0.182 -3.637 0 13 32 30 46 1.5 38.64 5.53
NM_023101 3730 44660 100 80 387 394 248 126 98 240 36 327 220 31 55 304 112 22 10053 0 31494 150 0 90 154 172 276 0.903 0.664 0.002 0.007 3.895 0.147 0.15 0.282 0.27 -2.769 0 25 37 23 38 0.52 23.46 8.29
U60562 3870 44650 90 52 302 483 296 136 101 293 44 372 376 32 112 384 114 22 7079 0 25094 194 0 92 190 216 337 1.094 0.497 0.01 0.012 4.617 0.113 0.15 0.193 0.206 -3.14 0 21 36 9 30 0.71 31.59 10.5
NM_012873 4060 44660 130 120 604 1081 264 681 101 913 589 691 301 32 298 943 635 543 81676 0 129680 775 0 92 168 1318 1502 18.125 2.714 0.312 0.345 2.874 0.701 0.645 0.649 0.774 -0.513 0 99 100 63 78 -0.3 126.66 161.07
M25823 4240 44650 80 52 290 400 247 109 102 268 17 251 350 40 32 352 104 12 5686 0 20825 220 0 92 132 232 285 0.175 0.437 0.017 0.018 3.808 0.055 0.063 0.103 0.129 -4.196 0 3 17 3 38 1.41 27.75 3.04
NM_019323 4430 44650 100 80 387 430 221 121 100 307 31 672 302 38 55 267 101 11 9675 0 34420 144 0 90 123 155 338 0.553 0.692 0.008 0.012 6.053 0.076 0.101 0.169 0.22 -3.71 0 15 32 11 35 1.14 33.73 6.91
NM_053655 4600 44650 150 156 665 298 203 111 96 176 24 260 178 31 57 201 96 9 17336 0 46547 79 0 87 122 88 200 0.484 0.534 0.004 0.012 4.727 0.114 0.136 0.265 0.246 -3.134 -50 13 25 21 38 0.26 13.65 4.97

Total number of rows: 10000

Table truncated, full table size 2022 Kbytes.




Supplementary data files not provided

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