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GEO accession:
Sample GSM38956
Query DataSets for GSM38956
Status
Public on Jan 14, 2006
Title
108c: AEC I- AEC II
Sample type
RNA
Channel 1
Source name
AEC I
Organism
Rattus norvegicus
Extracted molecule
total RNA
Channel 2
Source name
AEC II
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
Freshly isolated alveolar epithelial cells (AEC) type I and II were monitored for transcriptome with DNA microarray hybridization using 3DNA 50 version 2 kit.
Submission date
Jan 14, 2005
Last update date
May 29, 2005
Contact name
Zhongming Chen
E-mail(s)
zhongmi@okstate.edu
Phone
405-744-0329
URL
http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
Organization name
Oklahoma State University
Department
Deptment of Physiological Sciences
Lab
Lin Liu Lab
Street address
264 McElroy Hall
City
Stillwater
State/province
OK
ZIP/Postal code
74078
Country
USA
Platform ID
GPL1699
Series (1)
GSE2160
Transcriptomes of Alveolar epithelial cells
Data table header descriptions
ID_REF
X
Y
Dia.
F Pixels
B Pixels
F3 Mean
B3 Mean
F5 Mean
B5 Mean
F3 Mean - B3
CH1 signal: green, background subtracted fluorescence intensity
F5 Mean - B5
CH2 signal: red, background-subtracted fluorescence intensity
F3 SD
B3 SD
B5 SD
F5 SD
F3 Median
F5 Median
F5 Median - B5
F5 Total Intensity
F5 % Sat.
F3 Total Intensity
F3 Median - B3
F3 % Sat.
B5 Median
B3 Median
Sum of Medians
Sum of Means
SNR 5
SNR 3
Rgn R? (5/3)
Rgn Ratio (5/3)
Ratios SD (5/3)
Ratio of Medians (5/3)
Ratio of Means (5/3)
Median of Ratios (5/3)
Mean of Ratios (5/3)
Log Ratio (5/3)
Flags
Spot quality from GenePix
% > B5+2SD
% > B5+1SD
% > B3+2SD
% > B3+1SD
VALUE
LOWESS normalized log ratio of "F3 mean -B3" vs "F5 mean - B5"
CH1_MEAN
Linearly scaled "F3 mean -B3" as: lowest 5% to 0, highest 5% to 255
CH2_MEAN
Linearly scaled "F5 mean -B5" as: lowest 5% to 0, highest 5% to 255
Data table
ID_REF
X
Y
Dia.
F Pixels
B Pixels
F3 Mean
B3 Mean
F5 Mean
B5 Mean
F3 Mean - B3
F5 Mean - B5
F3 SD
B3 SD
B5 SD
F5 SD
F3 Median
F5 Median
F5 Median - B5
F5 Total Intensity
F5 % Sat.
F3 Total Intensity
F3 Median - B3
F3 % Sat.
B5 Median
B3 Median
Sum of Medians
Sum of Means
SNR 5
SNR 3
Rgn R? (5/3)
Rgn Ratio (5/3)
Ratios SD (5/3)
Ratio of Medians (5/3)
Ratio of Means (5/3)
Median of Ratios (5/3)
Mean of Ratios (5/3)
Log Ratio (5/3)
Flags
% > B5+2SD
% > B5+1SD
% > B3+2SD
% > B3+1SD
VALUE
CH1_MEAN
CH2_MEAN
AF007818
1190
44560
100
80
458
1462
302
155
104
1272
59
6583
371
31
248
401
99
3
12414
0
116970
211
0
96
190
214
1331
1.645
3.127
0.523
0.023
3.862
0.014
0.046
0.11
0.15
-6.136
-100
15
28
16
32
3.07
181.7
14.64
AF027331
1360
44630
120
120
559
1194
293
183
102
1005
90
6214
290
31
351
395
129
36
22015
0
143278
206
0
93
189
242
1095
2.613
3.107
0.875
0.054
4.563
0.175
0.09
0.223
0.196
-2.517
0
36
55
19
41
2.15
140.76
23.21
AF032925
1550
44630
110
80
446
523
257
171
102
350
79
393
246
33
92
410
143
51
13704
0
41826
237
0
92
173
288
429
2.091
1.081
0.039
0.041
3.027
0.215
0.226
0.176
0.189
-2.216
0
42
63
31
48
0.45
40.33
20.17
AF046886
1720
44630
150
156
699
342
284
111
101
170
20
265
449
41
40
261
101
10
17344
0
53328
89
0
91
172
99
190
0.244
0.129
0.112
0.043
3.458
0.112
0.118
0.145
0.182
-3.154
-50
7
23
1
14
0.35
12.73
3.87
S79292
1910
44640
120
120
599
471
363
164
105
311
72
331
1421
48
86
392
142
50
19682
0
56554
232
0
92
160
282
383
1.229
0.076
0.014
0.015
4.147
0.216
0.232
0.189
0.211
-2.214
0
26
51
0
0
0.31
34.35
18.23
NM_053986
2090
44640
100
80
414
475
399
124
99
315
34
330
2743
37
52
391
109
19
9882
0
38031
231
0
90
160
250
349
0.676
0.028
0.027
0.026
4.386
0.082
0.108
0.15
0.169
-3.604
0
17
32
0
0
1.1
34.96
7.74
NM_019360
2270
44640
140
156
702
1053
427
458
103
889
366
1352
2529
55
221
765
430
338
71498
0
164226
601
0
92
164
939
1255
6.455
0.248
0.201
0.114
2.978
0.562
0.412
0.549
0.524
-0.83
0
91
96
1
2
0.26
122.98
99.46
M35602
2480
44670
80
52
216
1895
317
148
104
1702
52
1543
361
31
80
1391
123
27
7708
0
98535
1198
0
96
193
1225
1754
1.419
4.371
0.059
0.013
3.271
0.023
0.031
0.065
0.067
-5.472
-100
28
48
67
80
3.7
247.64
12.71
M64391
2620
44660
130
120
494
771
238
145
103
625
51
1042
259
33
70
451
131
37
17443
0
92472
305
0
94
146
342
676
1.273
2.058
0.01
0.008
4.044
0.121
0.082
0.268
0.229
-3.043
-100
35
50
39
53
1.96
82.5
12.43
S48142
2800
44670
80
52
251
380
237
114
102
226
20
331
207
30
44
256
101
7
5918
0
19740
102
0
94
154
109
246
0.4
0.691
0
0
4.25
0.069
0.088
0.222
0.229
-3.865
0
17
34
25
40
0.93
21.31
3.87
AB050745
2990
44650
130
120
692
497
269
363
105
343
270
338
449
39
177
473
339
246
43570
0
59597
319
0
93
154
565
613
6.615
0.508
0.041
0.062
3.541
0.771
0.787
0.719
0.858
-0.375
0
90
95
4
30
-0.97
39.25
72.94
NM_030838
3180
44630
90
52
342
504
357
144
103
308
52
380
694
37
61
393
133
41
7502
0
26219
197
0
92
196
238
360
1.108
0.212
0.017
0.018
4.342
0.208
0.169
0.182
0.213
-2.264
0
26
53
1
13
0.63
33.89
12.71
NM_017026
3320
44650
90
52
331
797
351
164
107
579
68
477
451
40
85
747
142
46
8523
0
41454
529
0
96
218
575
647
1.425
0.989
0.039
0.031
3.875
0.087
0.117
0.078
0.09
-3.524
0
30
55
23
57
1.51
75.44
17.13
NM_053295
3510
44660
80
52
308
531
288
120
105
339
26
384
255
35
47
416
112
18
6220
0
27596
224
0
94
192
242
365
0.429
0.953
0.028
0.028
3.827
0.08
0.077
0.124
0.182
-3.637
0
13
32
30
46
1.5
38.64
5.53
NM_023101
3730
44660
100
80
387
394
248
126
98
240
36
327
220
31
55
304
112
22
10053
0
31494
150
0
90
154
172
276
0.903
0.664
0.002
0.007
3.895
0.147
0.15
0.282
0.27
-2.769
0
25
37
23
38
0.52
23.46
8.29
U60562
3870
44650
90
52
302
483
296
136
101
293
44
372
376
32
112
384
114
22
7079
0
25094
194
0
92
190
216
337
1.094
0.497
0.01
0.012
4.617
0.113
0.15
0.193
0.206
-3.14
0
21
36
9
30
0.71
31.59
10.5
NM_012873
4060
44660
130
120
604
1081
264
681
101
913
589
691
301
32
298
943
635
543
81676
0
129680
775
0
92
168
1318
1502
18.125
2.714
0.312
0.345
2.874
0.701
0.645
0.649
0.774
-0.513
0
99
100
63
78
-0.3
126.66
161.07
M25823
4240
44650
80
52
290
400
247
109
102
268
17
251
350
40
32
352
104
12
5686
0
20825
220
0
92
132
232
285
0.175
0.437
0.017
0.018
3.808
0.055
0.063
0.103
0.129
-4.196
0
3
17
3
38
1.41
27.75
3.04
NM_019323
4430
44650
100
80
387
430
221
121
100
307
31
672
302
38
55
267
101
11
9675
0
34420
144
0
90
123
155
338
0.553
0.692
0.008
0.012
6.053
0.076
0.101
0.169
0.22
-3.71
0
15
32
11
35
1.14
33.73
6.91
NM_053655
4600
44650
150
156
665
298
203
111
96
176
24
260
178
31
57
201
96
9
17336
0
46547
79
0
87
122
88
200
0.484
0.534
0.004
0.012
4.727
0.114
0.136
0.265
0.246
-3.134
-50
13
25
21
38
0.26
13.65
4.97
Total number of rows:
10000
Table truncated, full table size
2022 Kbytes
.
Supplementary data files not provided
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