NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM38970 Query DataSets for GSM38970
Status Public on Jan 14, 2006
Title 207c: AEC I- AEC II
Sample type RNA
 
Channel 1
Source name AEC I
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name AEC II
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description Freshly isolated alveolar epithelial cells (AEC) type I and II were monitored for transcriptome with DNA microarray hybridization using 3DNA 50 version 2 kit.
 
Submission date Jan 14, 2005
Last update date May 29, 2005
Contact name Zhongming Chen
E-mail(s) zhongmi@okstate.edu
Phone 405-744-0329
URL http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
Organization name Oklahoma State University
Department Deptment of Physiological Sciences
Lab Lin Liu Lab
Street address 264 McElroy Hall
City Stillwater
State/province OK
ZIP/Postal code 74078
Country USA
 
Platform ID GPL1699
Series (1)
GSE2160 Transcriptomes of Alveolar epithelial cells

Data table header descriptions
ID_REF
X
Y
Dia.
F Pixels
B Pixels
F3 Mean
B3 Mean
F5 Mean
B5 Mean
F3 Mean - B3 CH1 signal: green, background subtracted fluorescence intensity
F5 Mean - B5 CH2 signal: red, background-subtracted fluorescence intensity
F3 SD
B3 SD
B5 SD
F5 SD
F3 Median
F5 Median
F5 Median - B5
F5 Total Intensity
F5 % Sat.
F3 Total Intensity
F3 Median - B3
F3 % Sat.
B5 Median
B3 Median
Sum of Medians
Sum of Means
SNR 5
SNR 3
Rgn R? (5/3)
Rgn Ratio (5/3)
Ratios SD (5/3)
Ratio of Medians (5/3)
Ratio of Means (5/3)
Median of Ratios (5/3)
Mean of Ratios (5/3)
Log Ratio (5/3)
Flags Spot quality from GenePix
% > B5+2SD
% > B5+1SD
% > B3+2SD
% > B3+1SD
VALUE LOWESS normalized log ratio of "F3 mean -B3" vs "F5 mean - B5"
CH1_MEAN Linearly scaled "F3 mean -B3" as: lowest 5% to 0, highest 5% to 255
CH2_MEAN Linearly scaled "F5 mean -B5" as: lowest 5% to 0, highest 5% to 255

Data table
ID_REF X Y Dia. F Pixels B Pixels F3 Mean B3 Mean F5 Mean B5 Mean F3 Mean - B3 F5 Mean - B5 F3 SD B3 SD B5 SD F5 SD F3 Median F5 Median F5 Median - B5 F5 Total Intensity F5 % Sat. F3 Total Intensity F3 Median - B3 F3 % Sat. B5 Median B3 Median Sum of Medians Sum of Means SNR 5 SNR 3 Rgn R? (5/3) Rgn Ratio (5/3) Ratios SD (5/3) Ratio of Medians (5/3) Ratio of Means (5/3) Median of Ratios (5/3) Mean of Ratios (5/3) Log Ratio (5/3) Flags % > B5+2SD % > B5+1SD % > B3+2SD % > B3+1SD VALUE CH1_MEAN CH2_MEAN
AF007818 1220 44850 80 52 332 482 190 109 94 345 19 317 134 22 33 425 104 14 5674 0 25057 288 0 90 137 302 364 0.682 2.179 0.029 0.019 2.79 0.049 0.055 0.12 0.124 -4.363 0 19 38 53 73 1.51 20.85 0.79
AF027331 1410 44850 70 32 236 801 187 571 98 667 480 405 139 35 232 734 542 451 18261 0 25625 600 0 91 134 1051 1147 13.514 4.417 0.379 0.478 2.48 0.752 0.72 0.738 0.74 -0.412 0 100 100 87 90 -0.11 47.82 41.51
AF032925 1590 44860 80 52 316 1515 199 1227 93 1371 1136 874 144 28 659 1532 1191 1100 63823 0 78790 1388 0 91 144 2488 2507 40.5 9.139 0.706 0.779 2.009 0.793 0.829 0.824 0.879 -0.336 0 100 100 90 92 -0.07 106.77 99.46
AF046886 1770 44870 80 52 321 323 153 132 93 219 44 245 111 26 77 236 105 17 6874 0 16793 132 0 88 104 149 263 1.5 1.532 0.217 0.137 3.526 0.129 0.201 0.161 0.179 -2.957 0 26 40 42 57 0 10.3 3
S79292 1950 44860 80 52 340 819 144 600 96 719 511 453 94 26 303 831 548 459 31212 0 42566 731 0 89 100 1190 1230 19.385 7.181 0.477 0.603 2.273 0.628 0.711 0.651 0.729 -0.671 0 100 100 90 96 -0.05 52.17 44.25
NM_053986 2130 44850 80 52 312 897 148 195 94 792 107 530 94 20 102 777 156 68 10144 0 46668 672 0 88 105 740 899 5.05 7.968 0.222 0.079 3.049 0.101 0.135 0.119 0.117 -3.305 0 71 88 90 96 1.88 58.28 8.57
NM_019360 2310 44850 110 80 532 3170 137 2733 95 3075 2643 2212 99 22 2012 3590 3157 3067 218632 0 253583 3495 0 90 95 6562 5718 119.909 30.636 0.84 0.873 2.236 0.878 0.86 0.889 0.877 -0.188 0 95 96 82 88 0.15 249.45 232.57
M35602 2510 44850 70 32 232 341 146 163 92 240 76 187 107 20 62 296 155 68 5208 0 10913 195 0 87 101 263 316 3.55 1.822 0.077 0.093 5.171 0.349 0.317 0.277 0.325 -1.52 0 68 78 46 75 -0.18 12.06 5.83
M64391 2670 44850 90 52 400 368 147 253 94 270 164 215 108 24 166 333 201 112 13143 0 19146 235 0 89 98 347 434 6.625 2.046 0.343 0.453 3.284 0.477 0.607 0.666 0.677 -1.069 0 76 82 51 75 -0.6 14.57 13.6
S48142 2860 44840 90 52 383 361 144 129 94 262 39 222 105 22 59 294 105 15 6721 0 18784 195 0 90 99 210 301 1.591 2.067 0.09 0.069 3.757 0.077 0.149 0.144 0.181 -3.7 0 26 46 48 67 0.49 13.9 2.56
AB050745 3030 44850 90 52 399 628 150 792 94 525 702 402 104 21 283 532 742 652 41161 0 32632 429 0 90 103 1081 1227 33.238 4.596 0.468 1.269 2.058 1.52 1.337 1.508 1.619 0.604 0 100 100 73 96 -0.96 35.93 61.12
NM_030838 3220 44840 70 32 236 416 145 415 92 320 327 259 108 21 171 333 424 336 13271 0 13303 237 0 88 96 573 647 15.381 2.509 0.273 0.611 3.504 1.418 1.022 1.043 1.095 0.504 0 93 96 50 78 -0.95 18.76 28
NM_017026 3390 44840 70 32 236 469 140 224 97 373 132 284 104 23 124 448 184 92 7159 0 14997 352 0 92 96 444 505 5.522 3.163 0.186 0.216 4.092 0.261 0.354 0.327 0.289 -1.936 0 68 81 65 81 0.24 23.2 10.78
NM_053295 3570 44850 70 32 236 838 152 516 97 730 425 452 100 24 236 713 524 433 16516 0 26803 605 0 91 108 1038 1155 17.458 6.86 0.54 0.445 2.102 0.716 0.582 0.53 0.62 -0.483 0 96 96 96 100 0.18 53.09 36.66
NM_023101 3750 44840 90 52 400 418 149 220 96 315 130 202 105 24 128 418 195 105 11445 0 21749 315 0 90 103 420 445 5.167 2.562 0.17 0.217 3.35 0.333 0.413 0.309 0.32 -1.585 0 67 80 69 84 -0.09 18.34 10.6
U60562 3940 44850 70 32 236 483 145 239 91 379 150 243 97 19 117 441 216 127 7654 0 15470 337 0 89 104 464 529 7.789 3.485 0.228 0.241 3.805 0.377 0.396 0.405 0.377 -1.408 0 87 93 75 87 0.16 23.7 12.37
NM_012873 4130 44840 100 80 442 1863 144 2137 93 1764 2048 1360 98 22 1515 2009 2738 2649 170926 0 149041 1910 0 89 99 4559 3812 92.909 17.541 0.852 1.164 2.35 1.387 1.161 1.137 1.215 0.472 0 97 97 80 85 -0.42 139.67 180.01
M25823 4300 44830 80 52 301 356 134 175 92 261 87 254 88 20 107 286 159 71 9103 0 18491 191 0 88 95 262 348 4.15 2.523 0.074 0.105 4.63 0.372 0.333 0.429 0.413 -1.428 0 59 71 50 71 -0.11 13.82 6.8
NM_019323 4490 44840 70 32 236 467 125 214 96 374 126 296 85 31 112 438 186 98 6853 0 14942 345 0 88 93 443 500 3.806 4.024 0.123 0.137 3.238 0.284 0.337 0.39 0.409 -1.816 0 62 87 65 75 0.29 23.28 10.25
NM_053655 4660 44840 80 52 332 398 121 254 93 307 166 302 77 21 142 322 223 135 13205 0 20682 231 0 88 91 366 473 7.667 3.597 0.144 0.222 4.8 0.584 0.541 0.453 0.594 -0.775 0 80 90 61 69 -0.35 17.67 13.78

Total number of rows: 10000

Table truncated, full table size 2030 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap