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Sample GSM3964084 Query DataSets for GSM3964084
Status Public on Dec 31, 2022
Title M4-10, SHI1.1uM.GSK862.d4.n1.n1
Sample type RNA
 
Source name SHI1, GSK3484862, 1 µM
Organism Homo sapiens
Characteristics cell line: SHI1
cell type: AML
Treatment protocol Cells were plated 24 hours before treatment with 0.1% DMSO, 1 µM GSK3484862, then grown for 96 hours before collection.
Growth protocol Cell lines were obtained from the American Type Culture Collection, the Deutsche Sammlung von Mikroorganismen und Zellbulturen, or AddexBio and maintained in the recommended cell culture media at 37°C in 5% CO2.
Extracted molecule total RNA
Extraction protocol RNA was isolated, labeled, and hybridized to Affymetrix GeneChip® Human Genome U133 Plus 2.0 arrays at Q2 Solutions.
Label biotin
Label protocol Not provided
 
Hybridization protocol Not provided
Scan protocol Not provided
Data processing Differential gene expression analysis was performed using limma with default settings for priors and other parameters on human genome U133 Plus 2.0 Affymetrix microarray .CEL files. Expression changes with adjusted p-values < 0.05 and absolute log2 fold change > 1 were considered significant.
 
Submission date Jul 23, 2019
Last update date Dec 31, 2022
Contact name Shawn W Foley
E-mail(s) shawn.w.foley@gsk.com
Organization name GlaxoSmithKline
Department Oncology
Street address 1250 S. Collegeville Rd
City Collegeville
State/province PA
ZIP/Postal code 19426
Country USA
 
Platform ID GPL570
Series (1)
GSE134716 Expression array of DNMT1 inhibitor treated AML cell lines

Data table header descriptions
ID_REF
VALUE Limma normalized signal intensity

Data table
ID_REF VALUE
1053_at 12.4471284
117_at 2.995230156
1294_at 7.317099317
1405_i_at 12.64555612
1438_at 2.14250705
1487_at 9.035889608
1552256_a_at 11.26101064
1552257_a_at 11.1985073
1552263_at 10.8783149
1552264_a_at 11.02315975
1552272_a_at 3.750929938
1552274_at 11.67644687
1552275_s_at 11.28521756
1552276_a_at 4.706194144
1552277_a_at 10.27253165
1552279_a_at 5.02856639
1552286_at 7.652293858
1552287_s_at 10.15240217
1552288_at 4.649244246
1552291_at 9.262335579

Total number of rows: 27306

Table truncated, full table size 606 Kbytes.




Supplementary file Size Download File type/resource
GSM3964084_EA15172_603429_HG-U133_PLUS_2_M4-10.CEL.gz 5.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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