NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4119108 Query DataSets for GSM4119108
Status Public on Oct 12, 2019
Title 162CTRL
Sample type SRA
 
Source name Glomeruli
Organism Mus musculus
Characteristics age: 3-week-old
genotype: wild type
Extracted molecule total RNA
Extraction protocol Glomeruli were isolated and RNA was extracted using using RNeasy mini kit (QIAGEN).
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing Trim using fastp 0.19.5
Map using STAR 2.6.0 (2-pass method)
Count using HTSeq 0.11.1
Analysis using DESeq2
Genome_build: grch37
Supplementary_files_format_and_content: Gene expression table
 
Submission date Oct 11, 2019
Last update date Oct 15, 2019
Contact name Tomoko Takano
E-mail(s) tomoko.takano@mcgill.ca
Phone 5149341934
Organization name McGill University Health Centre (MUHC)
Department Department of Medicine
Lab Division of Experimental Medicine
Street address 1001 Decarie Boulevard
City Montreal
State/province Quebec
ZIP/Postal code H4A 3J1
Country Canada
 
Platform ID GPL13112
Series (1)
GSE138774 RNA-seq analysis using glomeruli isolated from control and podocyte-specific bPIX deficient mice
Relations
BioSample SAMN13019430
SRA SRX6980983

Supplementary file Size Download File type/resource
GSM4119108_147KO_counts_file.txt.gz 195.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.