|
Status |
Public on Oct 12, 2019 |
Title |
147KO |
Sample type |
SRA |
|
|
Source name |
Glomeruli
|
Organism |
Mus musculus |
Characteristics |
age: 3-week-old genotype: bPIX -/-
|
Extracted molecule |
total RNA |
Extraction protocol |
Glomeruli were isolated and RNA was extracted using using RNeasy mini kit (QIAGEN).
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
Trim using fastp 0.19.5 Map using STAR 2.6.0 (2-pass method) Count using HTSeq 0.11.1 Analysis using DESeq2 Genome_build: grch37 Supplementary_files_format_and_content: Gene expression table
|
|
|
Submission date |
Oct 11, 2019 |
Last update date |
Oct 15, 2019 |
Contact name |
Tomoko Takano |
E-mail(s) |
tomoko.takano@mcgill.ca
|
Phone |
5149341934
|
Organization name |
McGill University Health Centre (MUHC)
|
Department |
Department of Medicine
|
Lab |
Division of Experimental Medicine
|
Street address |
1001 Decarie Boulevard
|
City |
Montreal |
State/province |
Quebec |
ZIP/Postal code |
H4A 3J1 |
Country |
Canada |
|
|
Platform ID |
GPL13112 |
Series (1) |
GSE138774 |
RNA-seq analysis using glomeruli isolated from control and podocyte-specific bPIX deficient mice |
|
Relations |
BioSample |
SAMN13019427 |
SRA |
SRX6980986 |