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Sample GSM4119111 Query DataSets for GSM4119111
Status Public on Oct 12, 2019
Title 147KO
Sample type SRA
 
Source name Glomeruli
Organism Mus musculus
Characteristics age: 3-week-old
genotype: bPIX -/-
Extracted molecule total RNA
Extraction protocol Glomeruli were isolated and RNA was extracted using using RNeasy mini kit (QIAGEN).
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing Trim using fastp 0.19.5
Map using STAR 2.6.0 (2-pass method)
Count using HTSeq 0.11.1
Analysis using DESeq2
Genome_build: grch37
Supplementary_files_format_and_content: Gene expression table
 
Submission date Oct 11, 2019
Last update date Oct 15, 2019
Contact name Tomoko Takano
E-mail(s) tomoko.takano@mcgill.ca
Phone 5149341934
Organization name McGill University Health Centre (MUHC)
Department Department of Medicine
Lab Division of Experimental Medicine
Street address 1001 Decarie Boulevard
City Montreal
State/province Quebec
ZIP/Postal code H4A 3J1
Country Canada
 
Platform ID GPL13112
Series (1)
GSE138774 RNA-seq analysis using glomeruli isolated from control and podocyte-specific bPIX deficient mice
Relations
BioSample SAMN13019427
SRA SRX6980986

Supplementary file Size Download File type/resource
GSM4119111_162CTRL_counts_file.txt.gz 198.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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