|
| Status |
Public on Sep 10, 2020 |
| Title |
African Bush Elephant PBMC 1 |
| Sample type |
SRA |
| |
|
| Source name |
Adult Female PBMC
|
| Organism |
Loxodonta africana |
| Characteristics |
tissue: PBMC
gender: Female
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Ficoll-Paque density gradient, 3 washes
Illumina TruSeq Stranded RNA kit with Ribo-Zero Gold
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
counts_elephant19.txt
|
| Data processing |
Sequenced reads were trimmed for adaptor sequence with cuatadapt
STAR aligner
calculated expression counts with RSEM and FeatureCounts
Calculated differential expression with EdgeR
Genome_build: loxAfr3
Supplementary_files_format_and_content: BAM, RNA Expression Levels
|
| |
|
| Submission date |
Apr 05, 2020 |
| Last update date |
Sep 10, 2020 |
| Contact name |
Chris Gregg |
| E-mail(s) |
chris.gregg@neuro.utah.edu
|
| Organization name |
University of Utah
|
| Department |
Neurobiology and Anatomy
|
| Lab |
Chris Gregg Lab
|
| Street address |
20 South 2030 East
|
| City |
Salt Lake City |
| State/province |
UT |
| ZIP/Postal code |
84112 |
| Country |
USA |
| |
|
| Platform ID |
GPL18016 |
| Series (1) |
| GSE148098 |
How to Make an Elephant: Functional Genomic Divergence and the Evolution of Cancer Suppression |
|
| Relations |
| BioSample |
SAMN14541777 |
| SRA |
SRX8060310 |
