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Sample GSM4454073 Query DataSets for GSM4454073
Status Public on Sep 10, 2020
Title African Bush Elephant PBMC 1
Sample type SRA
 
Source name Adult Female PBMC
Organism Loxodonta africana
Characteristics tissue: PBMC
gender: Female
Extracted molecule total RNA
Extraction protocol Ficoll-Paque density gradient, 3 washes
Illumina TruSeq Stranded RNA kit with Ribo-Zero Gold
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description counts_elephant19.txt
Data processing Sequenced reads were trimmed for adaptor sequence with cuatadapt
STAR aligner
calculated expression counts with RSEM and FeatureCounts
Calculated differential expression with EdgeR
Genome_build: loxAfr3
Supplementary_files_format_and_content: BAM, RNA Expression Levels
 
Submission date Apr 05, 2020
Last update date Sep 10, 2020
Contact name Chris Gregg
E-mail(s) chris.gregg@neuro.utah.edu
Organization name University of Utah
Department Neurobiology and Anatomy
Lab Chris Gregg Lab
Street address 20 South 2030 East
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
 
Platform ID GPL18016
Series (1)
GSE148098 How to Make an Elephant: Functional Genomic Divergence and the Evolution of Cancer Suppression
Relations
BioSample SAMN14541777
SRA SRX8060310

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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