|
Status |
Public on Sep 10, 2020 |
Title |
African Bush Elephant PBMC 3 |
Sample type |
SRA |
|
|
Source name |
Adult Female PBMC
|
Organism |
Loxodonta africana |
Characteristics |
tissue: PBMC gender: Female
|
Extracted molecule |
total RNA |
Extraction protocol |
Ficoll-Paque density gradient, 3 washes Illumina TruSeq Stranded RNA kit with Ribo-Zero Gold
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
counts_elephant19.txt
|
Data processing |
Sequenced reads were trimmed for adaptor sequence with cuatadapt STAR aligner calculated expression counts with RSEM and FeatureCounts Calculated differential expression with EdgeR Genome_build: loxAfr3 Supplementary_files_format_and_content: BAM, RNA Expression Levels
|
|
|
Submission date |
Apr 05, 2020 |
Last update date |
Sep 10, 2020 |
Contact name |
Chris Gregg |
E-mail(s) |
chris.gregg@neuro.utah.edu
|
Organization name |
University of Utah
|
Department |
Neurobiology and Anatomy
|
Lab |
Chris Gregg Lab
|
Street address |
20 South 2030 East
|
City |
Salt Lake City |
State/province |
UT |
ZIP/Postal code |
84112 |
Country |
USA |
|
|
Platform ID |
GPL18016 |
Series (1) |
GSE148098 |
How to Make an Elephant: Functional Genomic Divergence and the Evolution of Cancer Suppression |
|
Relations |
BioSample |
SAMN14541776 |
SRA |
SRX8060311 |