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Sample GSM4485256 Query DataSets for GSM4485256
Status Public on Dec 31, 2021
Title iBAT SVF_12Weeks_3
Sample type SRA
 
Source name interscapular brown adipose tissue
Organism Oryctolagus cuniculus
Characteristics tissue: interscapular brown adipose tissue
strain: New Zealand White
age: 12 weeks
fraction: stromal vascular fraction
Extracted molecule total RNA
Extraction protocol RNA extracted from total or the SVF fraction of BAT
RNA-Seq Quantification Library (Normal Library)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model BGISEQ-500
 
Description Rabbit.SVF.GeneExpression.FPKM.xls
Data processing Sequencing Reads Filtering using SOAPnuke: v1.5.2
Genome Mapping using HISAT2: v2.0.4
Mapping clean reads to reference using Bowtie2: v2.2.5
Gene expression cluster analysis using Cluster v3.0
DEG detection using DEseq2
Genome build: OryCun2.0
FPKM
 
Submission date Apr 18, 2020
Last update date Dec 31, 2021
Contact name Hai-Bin Ruan
E-mail(s) hruan@umn.edu
Phone 6123017686
Organization name University of Minnesota
Department Integrative Biology and Physiology
Street address 2231 6th St SE, 3-143 CCRB
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL28431
Series (1)
GSE148891 Transcriptomic reprograming during the involution of brown adipose tissue in rabbits
Relations
BioSample SAMN14616245
SRA SRX8136124

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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