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Sample GSM45279 Query DataSets for GSM45279
Status Public on Sep 23, 2005
Title Wild type sample #3
Sample type RNA
 
Source name S.cerevisiae strain BJ5459
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
Label Bioytinylated cRNAs detected by fluorescently-labelled streptavidin.
 
Description BJ5459 cells were grown in synthetic complete medium to A600 = 0.6. RNA was prepared using an RNeasy kit (Qiagen). This is #3 of three independently prepared samples.
Keywords = yeast SPT10
Data processing Each VALUE was calculated using Affymetrix GCOS software.
 
Submission date Mar 14, 2005
Last update date Oct 04, 2005
Contact name David Johannes Clark
E-mail(s) clarkda@mail.nih.gov
Phone 3014966966
Organization name NICHD, NIH
Department DDB
Lab SCGE
Street address 6 Center Drive Bldg 6A Rm 2A02
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL90
Series (2)
GSE2407 Role of yeast Spt10p in gene expression
GSE3354 Global effects of spt10 mutations on gene expression in budding yeast.

Data table header descriptions
ID_REF
Stat pairs The number of probe pairs that are associated with a given probe set.
Stat pairs used The number of probe pairs that were used as a basis for calculation of Value. For example, this number would reflect any probe pairs that were masked.
VALUE An overall estimate of transcript abundance for the particular sample. Signal values are roughly proportional to the amount of transcript present.
ABS_CALL A"call" of the presence or absence of expression of a transcript. This call indicates whether one can distinguish the signal against the background variability. P = present; M = marginal (ambiguous); A = absent.
DETECTION P-VALUE An indicator of the statistical significance of the "present" detection call. The lower the value, the greater the significance.

Data table
ID_REF Stat pairs Stat pairs used VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 20 20 2.1 A 0.989683
AFFX-MurIL10_at 20 20 1.3 A 0.999419
AFFX-MurIL4_at 20 20 1.4 A 0.988622
AFFX-MurFAS_at 20 20 2.8 A 0.963431
AFFX-BioB-5_at 20 20 151.8 P 0.018281
AFFX-BioB-M_at 20 20 167.2 P 0.000095
AFFX-BioB-3_at 20 20 159.7 P 0.001410
AFFX-BioC-5_at 20 20 554.4 P 0.000169
AFFX-BioC-3_at 20 20 535.3 P 0.000052
AFFX-BioDn-5_at 20 20 703.0 P 0.000044
AFFX-BioDn-3_at 20 20 3339.0 P 0.000052
AFFX-CreX-5_at 20 20 4754.1 P 0.000044
AFFX-CreX-3_at 20 20 6395.8 P 0.000044
AFFX-BioB-5_st 20 20 24.5 A 0.340661
AFFX-BioB-M_st 20 20 3.6 A 0.910522
AFFX-BioB-3_st 20 20 2.5 A 0.957038
AFFX-BioC-5_st 20 20 6.0 A 0.860518
AFFX-BioC-3_st 20 20 2.9 A 0.868639
AFFX-BioDn-5_st 20 20 7.9 A 0.712257
AFFX-BioDn-3_st 20 20 30.6 A 0.216524

Total number of rows: 9335

Table truncated, full table size 283 Kbytes.




Supplementary data files not provided

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