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Series GSE2407 Query DataSets for GSE2407
Status Public on Sep 23, 2005
Title Role of yeast Spt10p in gene expression
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by array
Summary Comparison of gene expression patterns for wild type yeast (BJ5459) and spt10-null::URA3 cells. Triplicate samples.
Keywords = yeast SPT10
Keywords: repeat sample
 
Overall design Three RNA samples from wild type, spt10-null and spt10-C388S cells were prepared independently on three occasions. These nine RNA samples were used to make cRNA and hybridised separately to Affymetrix S98 arrays at the same time.
 
Contributor(s) Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Marino-Ramirez L, Pompa TA, Jainerin M, Landsman D, Shen C, Clark DJ
Citation(s) 16199888, 16415340
Submission date Mar 14, 2005
Last update date Jul 01, 2016
Contact name David Johannes Clark
E-mail(s) clarkda@mail.nih.gov
Phone 3014966966
Organization name NICHD, NIH
Department DDB
Lab SCGE
Street address 6 Center Drive Bldg 6A Rm 2A02
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL90 [YG_S98] Affymetrix Yeast Genome S98 Array
Samples (6)
GSM45194 Wild type sample #1
GSM45279 Wild type sample #3
GSM45281 Wild type sample #2
Relations
BioProject PRJNA91617

Summary Table header descriptions
Wild Type Average Signal
spt10D Average Signal
P-Value
Calls: Wild Type Group -spt10D Group
Fold Change
Gene Symbol
Gene Descriptor
Sequence Derived From:

Data table
Wild Type Average Signal spt10D Average Signal P-Value Calls: Wild Type Group -spt10D Group Fold Change Gene Symbol Gene Descriptor Sequence Derived From:
4455.38 30.66 0.1159 PPP-APA -145.33 cytochrome-c oxidase subunit I Found forward in NC_001224 between 23612 and 23746 with 100% identity. NC_001224
2029.24 15.13 0.1209 PPP-APA -134.10 cytochrome-c oxidase subunit I Found forward in NC_001224 between 20508 and 20984 with 99.790356% identity. NC_001224
62.95 1.03 0.0001 PPP-AAA -60.99 SPT10 transcriptional regulator YJL127C
430.12 8.64 0.1467 PPP-APA -49.78 cytochrome-c oxidase subunit I Found forward in NC_001224 between 26627 and 26701 with 100% identity. NC_001224
406.00 9.57 0.1571 PPP-APA -42.43 ubiquinol--cytochrome-c reductase subunit (cytochrome B) Found forward in NC_001224 between 39141 and 39217 with 100% identity. NC_001224
271.03 6.81 0.1267 PPP-APA -39.82 F1F0-ATPase complex, FO A subunit Found forward in NC_001224 between 28487 and 29266 with 97.564103% identity. NC_001224
483.28 12.71 0.1037 PPP-APA -38.02 questionable ORF Found reverse in NC_001224 between 13748 and 14122 with 100% identity. NC_001224
220.63 6.13 0.1299 PPP-APA -36.01 ubiquinol--cytochrome-c reductase subunit (cytochrome B) Found forward in NC_001224 between 36540 and 36954 with 100% identity. NC_001224
171.52 6.18 0.1478 PPP-APA -27.76 ubiquinol--cytochrome-c reductase subunit (cytochrome B) Found forward in NC_001224 between 43297 and 43647 with 100% identity. NC_001224
226.99 10.64 0.1019 PPP-APA -21.33 cytochrome-c oxidase subunit I Found forward in NC_001224 between 21995 and 22246 with 97.222222% identity. NC_001224
154.28 7.23 0.1424 PPP-APA -21.33 ubiquinol--cytochrome-c reductase subunit (cytochrome B) Found forward in NC_001224 between 42508 and 42561 with 100% identity. NC_001224
243.93 12.24 0.1479 PPP-APA -19.92 ubiquinol--cytochrome-c reductase subunit (cytochrome B) Found forward in NC_001224 between 40841 and 41093 with 100% identity. NC_001224
136.50 8.37 0.1102 PPP-APA -16.30 cytochrome-c oxidase subunit I Found forward in NC_001224 between 13818 and 13988 with 100% identity. NC_001224
16.20 1.00 0.0000 AAA-AAA -16.20 Saccharomyces cerevisiae chromosome VIII, complete chromosome sequence. Found forward in NC_001140 between 544488 and 545487 with 100% identity. NC_001140
42.67 2.78 0.0568 PPP-APA -15.32 probable mRNA maturase aI5-alpha Found forward in NC_001224 between 21995 and 23167 with 99.40324% identity. NC_001224
39.64 2.84 0.0660 MAA-AAA -13.95 ADE4 phosphoribosylpyrophosphate amidotransferase YMR300C
307.99 22.38 0.2339 PPP-APA -13.76 similarity to T.brucei mitochondrion protein SGC6 Found reverse in NC_001224 between 34032 and 34430 with 88.279302% identity. NC_001224
23.98 1.91 0.0176 PAP-AAA -12.53 Saccharomyces cerevisiae chromosome IV, complete chromosome sequence. Found forward in NC_001136 between 1306061 and 1307060 with 100% identity. NC_001136
45.51 3.87 0.1032 PPP-APA -11.76 COX1 intron 1 protein Found forward in NC_001224 between 13818 and 16322 with 99.92016% identity. NC_001224
57.79 5.01 0.0314 PPM-AAA -11.54 YJLWDELTA19 Ty1 LTR YJLWDELTA19

Total number of rows: 9335

Table truncated, full table size 1138 Kbytes.




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Supplementary data files not provided
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