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Sample GSM460043 Query DataSets for GSM460043
Status Public on Sep 10, 2011
Title SKL12H_R2
Sample type RNA
 
Source name SKL12H_R2
Organism Medicago truncatula
Characteristics line: Sickle
age: 3day
Treatment protocol 12h - time course study - pathogen infection, ralstonia solanacearum gmi 1000 strain: quantity 1e+07cfu/ml time 12hour . Inoculation was performed as described (Vailleau et al., 2007). Bacterial concentration was set at 107cfu/ml for the inoculation.
Growth protocol root - Seeds were surface sterilized, vernalized and germinated according to Boisson-Dernier (Boisson-Dernier et al., 2001). 24h germinating seed were grown on Fahraeus medium (Fahraeus, 1957) covered with filter paper in square Petri dishes at 25°C (day/night 12h). Roots kept in the dark with a mask on the Petri dish made of kraft paper and aluminium.
Extracted molecule total RNA
Extraction protocol SKL12H_R2:8.44ug.
Label Biotin
Label protocol labelling Biotin direct, amplification=yes, cRNA 20 ug.
 
Hybridization protocol labelled extract quantity: 15ug
Scan protocol GCOS, Biotin:pmt voltage 570nm,650V,laser power 1
Description medicago truncatula mutant (sickle a17 mutant) - age: 3day
Data processing The data were normalized with the gcrma algorithm (Irizarry et al., 2003), available in the Bioconductor package (Gentleman and Carey, 2002).
 
Submission date Oct 08, 2009
Last update date Sep 10, 2011
Contact name sandrine balzergue
Organization name INRA
Lab IRHS
Street address Rue G. Morel
City Beaucouze
ZIP/Postal code 49000
Country France
 
Platform ID GPL4652
Series (1)
GSE18473 Transcriptom analysis of the interaction Medicago truncatula – Ralstonia solanacearum

Data table header descriptions
ID_REF ID number
VALUE Normalized data by GCRMA

Data table
ID_REF VALUE
AFFX-BioB-3_at 10.31411166
AFFX-BioB-5_at 10.14986162
AFFX-BioB-M_at 10.73260758
AFFX-BioC-3_at 11.79960148
AFFX-BioC-5_at 11.54107561
AFFX-BioDn-3_at 13.25945501
AFFX-BioDn-5_at 12.90410444
AFFX-CreX-3_at 15.0993521
AFFX-CreX-5_at 15.02255129
AFFX-DapX-3_at 9.697136554
AFFX-DapX-5_at 7.914842117
AFFX-DapX-M_at 8.947504694
AFFX-LysX-3_at 6.152260198
AFFX-LysX-5_at 4.01961989
AFFX-LysX-M_at 4.359818422
AFFX-Msa-actin-3_at 10.94705137
AFFX-Msa-actin-5_at 2.880147642
AFFX-Msa-actin-M_at 10.93131576
AFFX-Msa-gapc-3_at 12.37601693
AFFX-Msa-gapc-5_at 13.45476476

Total number of rows: 61278

Table truncated, full table size 1780 Kbytes.




Supplementary file Size Download File type/resource
GSM460043.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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