The GeneChip Medicago Genome Array is designed specifically to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti. The Medicago Genome Array is particularly useful for agriculture researchers studying legume genomics and symbiotic relationships between nitrogen fixing bacteria and plants. Sequence information for this array was selected from data sources including the TIGR M. truncatula gene index (The Institute for Genomic Research, January 2005), gene predictions from the International Medicago Genome Annotation Group (IMGAG), gene predictions from the S. meliloti genome, and M. sativa EST information made available by TIGR. The array contains over 61,200 probe sets: 32,167 M. truncatula EST/mRNA-based and chloroplast gene-based probe sets; 18,733 M. truncatula IMGAG and phase 2/3 BAC prediction-based probe sets; 1,896 M. sativa EST/mRNA-based probe sets; and 8,305 S. meliloti gene prediction-based probe sets.
affy_med_2011_09-Analysis of Medicago truncatula root transcriptome in response to mycorrhization by Glomus intraradices under phosphate and nitrogen limitation
affy_med_2011_14-Transcriptomic analysis of roots of WT (A17) Medicago truncatula plants and of a hypermycorrhizal mutant (B9) grown on limiting (P/10) or non-limiting phosphate (P2).
Rhizobial and non/mycorrhizal Medicago truncatula roots and shoots transcriptome
Data table header descriptions
ID
Affymetrix Probe Set ID
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation
4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation
4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation
4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation
4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
J04423
J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // gb // // /// AFFX-BioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // //
9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation
4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
J04423
J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // gb // // /// AFFX-BioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // //
9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation
4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
J04423
J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioD gene dethiobiotin synthetase /LEN=676 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // gb // // /// AFFX-BioDn-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // //
9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation
4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
J04423
J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioD gene dethiobiotin synthetase /LEN=676 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // gb // // /// AFFX-BioDn-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // //
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
AFFX-CreX-3
P06956 /// Q38403
6310 // DNA recombination // inferred from electronic annotation /// 6313 // transposition, DNA-mediated // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation
3677 // DNA binding // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
X03453
X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 /description=Bacteriophage P1 ORF2, putatitve cre protein // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // Bacteriophage /REF=X03453 /DEF=Bacteriophage P1 cre recombinase protein /LEN=1058 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // gb // // /// AFFX-CreX-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // //
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
AFFX-CreX-5
P06956 /// Q38403
6310 // DNA recombination // inferred from electronic annotation /// 6313 // transposition, DNA-mediated // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation
3677 // DNA binding // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
X03453
X03453 // X03453 /description=Bacteriophage P1 ORF2, putatitve cre protein // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // Bacteriophage /REF=X03453 /DEF=Bacteriophage P1 cre recombinase protein /LEN=1058 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // gb // // /// AFFX-CreX-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // //
6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation
5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation
3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
L38424
L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // unknown // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // gb // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // //
6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation
5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation
3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
L38424
L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // unknown // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // //
6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation
5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation
3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 4 transcripts. // false // Design Representative Id // R
AFFX-DapX-M
AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // unknown // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // gb // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // //
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
AFFX-LysX-3
P23630
8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation
3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
X17013
X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // gb // // /// AFFX-LysX-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // //
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
AFFX-LysX-5
P23630
8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation
3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R
X17013
X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // gb // // /// AFFX-LysX-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // //
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
AFFX-LysX-M
P23630
8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation
3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation
This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 4 transcripts. // false // Design Representative Id // R
AFFX-LysX-M
AFFX-LysX-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // gb // // /// AFFX-LysX-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // //
M. sativa /GEN=actin /DB_XREF=iMsa.2780 /FEA=mRNA /DEF=actin
gi|50319677|gb|CO514803.1|CO514803
This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R
M. sativa /GEN=actin /DB_XREF=iMsa.2780 /FEA=mRNA /DEF=actin
gi|50319677|gb|CO514803.1|CO514803
This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R
M. sativa /GEN=actin /DB_XREF=iMsa.2780 /FEA=mRNA /DEF=actin
gi|50319677|gb|CO514803.1|CO514803
This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R
M. sativa /GEN=gapc /DB_XREF=iMsa.3152 /FEA=mRNA /DEF=gapc
TC451
This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R
M. sativa /GEN=gapc /DB_XREF=iMsa.3152 /FEA=mRNA /DEF=gapc
TC451
This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R
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