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Sample GSM4622 Query DataSets for GSM4622
Status Public on Feb 27, 2003
Title 1hr Sal-DG vs 1hr MK-DG
Sample type RNA
 
Channel 1
Source name DG Hippocampus, 1hr Sal-DG was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name DG Hippocampus, 1hr MK-DG was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 1hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 1hr after MK experimental mice received their last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE316 Sal-DG vs MK-DG
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 39002.7 65107.4 65516 679.309 2626.92 2627 67.2572 3624.25 4160.15 3996.5 504.015 1416.07 1430 86.767 -1.03188 0
2 64.5732 2323.42 2309.5 42.8319 2592.94 2593 54.1812 48.993 1291.46 1290 57.6772 1452.18 1449 75.3644 0 0
3 56.878 2424.67 2416 62.5091 2538 2541.5 56.844 158.243 1402.04 1422 52.0824 1368.37 1365 93.4987 0.444381 0
4 93.4004 2521.48 2524 36.688 2521.22 2531 69.3926 207.872 1434.64 1437 32.1077 1386.13 1375 99.2594 0.347447 0
5 49.4242 2402.5 2411.5 48.4032 2506.08 2504 54.681 197.583 1390.83 1392 37.8184 1331.03 1325 70.6155 0.601811 0
6 121.565 2521.81 2517 36.2141 2482 2507 81.0617 261.866 1520.78 1496 70.3592 1424.45 1436 106.527 0.333271 0
7 41.1234 2405.1 2411 30.1544 2507.2 2510 46.0149 237.444 1559.76 1544 55.9374 1456.57 1452 95.1063 0.761472 0
8 2355.77 6144.71 6143.5 416.073 2486.15 2490.5 48.4426 2259.87 3000.67 3036.5 226.97 1349.98 1343.5 130.447 -0.0180504 -0.059962131
9 96.6802 2483.12 2481 48.3904 2476.44 2477 57.2061 275.212 1410.42 1422 45.5668 1296.68 1301 72.4309 0.45433 0
10 450.691 2978.64 2971 40.7437 2452.32 2451 45.9183 301.232 1343.59 1347 40.7135 1240.65 1237 72.7897 -0.174979 -0.581267656
11 124.499 2438.79 2430.5 44.7651 2393.99 2412.5 83.9488 282.065 1349 1351 34.9658 1234.38 1234.5 74.6494 0.355183 0
12 15008.2 26191.5 24633 4741.45 2422.74 2424 45.0309 14813 13055.6 12129 2859.41 1211.56 1214 63.2625 -0.00568523 -0.018885925
13 281.59 2691.84 2688 51.0185 2413.48 2416 48.811 351.836 1359.24 1349 72.3091 1204.07 1204 66.7861 0.0967225 0.32130519
14 59.3029 2200.52 2186 51.0858 2397.01 2397 49.7591 43.2576 1109.36 1110 49.4772 1219.92 1220 66.5418 0 0
15 2644.92 6514.61 6317 542.577 2390.64 2395 49.6641 2084.35 2821.96 2775 268.806 1313.67 1304 148.409 -0.103442 -0.343626886
16 85.7809 2230.92 2228 76.1139 2344.73 2347 71.9759 38.6478 1324.28 1331 64.3386 1503.76 1504 59.4507 0 0
17 1029.87 3768.22 3790 150.637 2283.59 2314 123.021 1624.98 2487.09 2471 143.698 1306.65 1283 110.249 0.198064 0.657954366
18 115.756 2361.04 2369 47.5253 2331.63 2326.5 59.7369 205.303 1305.41 1311 44.1259 1262.29 1259.5 73.2715 0.248854 0
19 52.5981 2237.13 2234 61.5914 2341.27 2339 57.1231 123.547 1145.42 1134.5 51.8568 1169.28 1173 74.8086 0.370861 0
20 260.748 2590.62 2588.5 41.7986 2348.87 2347 50.9873 287.79 1310.08 1313.5 63.3214 1208.55 1197 97.4754 0.0428542 0.142358571

Total number of rows: 16281

Table truncated, full table size 1986 Kbytes.




Supplementary data files not provided
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