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Sample GSM4626 Query DataSets for GSM4626
Status Public on Feb 27, 2003
Title 2hr Sal-DG vs 2hr MK-DG
Sample type RNA
 
Channel 1
Source name DG Hippocampus, 2hr Sal-DG was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name DG Hippocampus, 2hr MK-DG was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 2hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 2hr after MK experimental mice received their last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE316 Sal-DG vs MK-DG
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 66360.1 30575.5 30455 4416.27 1068.95 1069 31.5639 21418.3 14632.1 14158.5 2433.87 1048.23 1048 34.857 -0.491123 0
2 77.1689 1030.26 1032 29.1423 1047.43 1048.5 24.1545 45.3028 1023.41 1019 38.5699 1017.79 1017 34.0015 0 0
3 76.2554 1009.38 1009 26.1896 1054.23 1053.5 23.8686 31.0299 998.833 999 25.5966 1030.42 1032.5 28.0441 0 0
4 80.5739 1085.96 1081.5 27.8202 1067.91 1070 23.6907 143.335 1099.86 1097.5 40.9713 1039.67 1038 32.3302 0.250157 0
5 71.9103 1022.27 1012.5 30.7136 1076.38 1075 22.5086 39.034 1002.27 1001 38.8212 1038.27 1034 35.2781 0 0
6 127.523 1115.12 1117 33.869 1076.03 1075 26.3983 175.779 1116.4 1107 38.7535 1036.94 1034 31.5531 0.139378 0
7 78.5718 1029.56 1027 19.8244 1077.25 1077 24.5937 33.9453 994.28 994 39.1062 1028.46 1027 30.6789 0 0
8 2479.33 2196.22 2207 89.5207 1082.16 1081 22.4193 2563.25 2584.52 2578 133.512 1029.18 1026.5 33.2109 0.0144576 0.048027108
9 350.816 1224.12 1226 28.8365 1081.67 1083.5 26.5681 359.924 1217.85 1217.5 33.9737 1027.95 1025 34.9112 0.0111313 0.036977378
10 326.266 1214.14 1210 43.5352 1082.74 1083 26.429 401.445 1234.25 1238 59.8292 1018.46 1019.5 31.8627 0.090054 0.299152913
11 138.523 1128.76 1127 17.3404 1084.6 1084 24.1785 194.384 1114.16 1116 40.166 1023.19 1021 33.5021 0.147139 0
12 45305.8 21108.3 20502 4342.67 1073.97 1076 28.8081 48886.3 32227.5 30372 7779.9 1013.93 1008.5 39.4243 0.0330336 0.109735244
13 494.873 1263.42 1269 45.3309 1055.2 1052.5 25.343 434.677 1236.92 1240 40.6083 1001.04 998.5 34.4664 -0.0563274 -0.187115573
14 194.914 1120.63 1118 32.6946 1050.57 1051 25.3075 243.01 1112.52 1110 27.616 992.422 990 30.8284 0.0957811 0.318177927
15 7353.1 4391.56 4216 758.218 1050.34 1051.5 24.5231 6010.39 4691.12 4378 840.421 1002.61 1004.5 36.6911 -0.0875676 -0.290893271
16 209.689 1126.58 1124.5 27.6957 1050.12 1049.5 24.7665 215.792 1103.88 1112.5 40.9559 1001 1001 31.8934 0.0124609 0.041394214
17 1092.87 1515.82 1518 27.8664 1034.11 1034 25.2758 671.476 1352.73 1352 65.0737 971.084 968 40.5784 -0.211537 -0.702710703
18 228.694 1110.79 1111.5 21.0713 1024.93 1026 25.293 273.752 1092.21 1091.5 52.7438 953.934 948.5 45.4354 0.0781032 0.259453214
19 166.252 1088.36 1080 29.106 1031.9 1032 25.4188 182.772 1061.92 1065 27.8611 978.864 981.5 37.6664 0.0411433 0.136675084
20 333.954 1177.43 1182 33.4613 1042.48 1043.5 26.4054 412.771 1227.79 1244.5 50.3663 1005.04 1002 33.0257 0.092023 0.305693789

Total number of rows: 16281

Table truncated, full table size 1973 Kbytes.




Supplementary data files not provided
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