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Sample GSM4627 Query DataSets for GSM4627
Status Public on Feb 27, 2003
Title 4hr MK-CA1 vs 4hr MK C+S-CA1
Sample type RNA
 
Channel 1
Source name CA1 Hippocampus, 4hr MK-CA1 was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CA1 Hippocampus, 4hr MK C+S-CA1 was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 4hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 4hr after the last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE317 MK-CA1 vs MK C+S-CA1
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 36758.2 50017.9 49691 2982.86 4051.13 4053.5 60.0638 12863.3 17317.7 17147.5 1022.06 2517.94 2516.5 50.7725 -0.456002 0
2 107.067 3741.65 3733.5 58.6617 4039.99 4041 60.7534 156.371 2229 2232 62.9673 2499.47 2495.5 41.5923 0.1645 0
3 300.309 3909.74 3902 51.4375 3980.95 3974.5 64.8551 361.509 2419.89 2418 52.8331 2434.48 2435 52.2174 0.0805512 0
4 142.713 3681.57 3662 76.7522 3939.13 3935 71.9665 198.223 2178.22 2180 54.8684 2395.19 2395 52.0469 0.142692 0
5 291.802 3836.56 3849 64.9286 3917.75 3912.5 62.42 362.202 2353.63 2349 58.0306 2366.74 2369 52.2718 0.0938638 0
6 182.693 3694.07 3692 73.7125 3906.63 3909.5 69.3017 200.369 2096.48 2063 145.362 2313.67 2314 64.0565 0.0401087 0
7 296.893 3828.6 3832 72.7026 3904.47 3907.5 55.642 345.415 2306.32 2316 44.4069 2341.19 2341.5 53.4377 0.0657411 0
8 1973.06 5980.29 5971.5 316.919 3859.21 3864 67.5537 2200.66 4416.39 4376 277.165 2338.12 2336 53.5507 0.0474129 0.157502245
9 280.946 3742.14 3748 60.0526 3839.07 3840 69.2226 280.691 2227.91 2221.5 38.8132 2345.3 2341 53.1534 -0.000393738 -0.001307969
10 250.075 3706.85 3667 118.822 3840.75 3841.5 59.9437 243.362 2167.23 2134.5 117.649 2331.83 2330.5 63.8764 -0.0118189 -0.039261536
11 105.904 3539.32 3549 82.2672 3838.96 3836 70.542 155.337 2047.84 2020 83.0269 2319.62 2322 57.2646 0.166361 0
12 17509.1 25666.9 25308 2126.12 3825.13 3828 68.8048 16056.4 20796.8 21034 1654.19 2338.58 2339 57.13 -0.0376139 -0.124950671
13 265.461 3674.59 3672 59.0178 3792.75 3791 60.2013 204.486 2085.85 2085 51.4435 2302.06 2303 50.0129 -0.113337 -0.376497364
14 171.731 3588.58 3579 68.8362 3813.03 3805 61.4904 212.084 2078.58 2074 40.857 2279.46 2286 55.4088 0.0916578 0.304480621
15 2304.91 6362.5 6294 197.804 3811.23 3820 64.5635 2116.15 4185 4158.5 173.059 2209.27 2219 62.7697 -0.0371078 -0.123269443
16 225.437 3635.92 3653.5 65.5226 3800.13 3801 62.5446 197.614 2061.71 2055.5 42.6945 2285.07 2279 60.3495 -0.0572083 -0.190041859
17 117.616 3471.16 3445 89.6036 3759.97 3756 55.8864 108.685 1935.48 1943 79.0512 2272.53 2268 55.0284 -0.0342958 0
18 198.735 3579.56 3568 73.6062 3772.11 3774 68.2501 244.168 2118.93 2120 48.9017 2279.49 2279 44.2081 0.089413 0.297023557
19 209.804 3589.13 3596.5 49.5978 3769.92 3768 53.4228 222.888 2096.21 2103.5 51.3631 2285.45 2287.5 50.8796 0.0262728 0.087276352
20 312.256 3683.35 3688 64.6257 3742.75 3746 64.2727 309.63 2200.54 2196 49.2124 2282.11 2286 43.8986 -0.00366696 -0.012181377

Total number of rows: 16281

Table truncated, full table size 2041 Kbytes.




Supplementary data files not provided

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