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Sample GSM4630 Query DataSets for GSM4630
Status Public on Feb 27, 2003
Title 4hr Sal-DG vs 4hr MK-DG
Sample type RNA
 
Channel 1
Source name DG Hippocampus, 4hr Sal-DG was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name DG Hippocampus, 4hr MK-DG was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 4hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 4hr after MK experimental mice received their last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE316 Sal-DG vs MK-DG
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 167614 65516.7 65517 0.669636 687.776 678 37.5492 141387 65517 65517 0.666667 384.762 374 41.7042 -0.0738985 0
2 47.0913 674.077 676.5 20.2463 666.762 665 17.6989 85.6403 368.692 365 16.9983 352.861 354 13.2816 0.259738 0
3 35.4111 655.185 652 16.3614 657.331 657.5 18.1292 39.0836 351.259 354 11.0787 351.318 350.5 10.7592 0.0428547 0
4 58.5195 677.885 683.5 22.0696 664.713 665 17.2071 51.2031 360.577 360 14.1058 356.573 355 12.7471 -0.0580049 0
5 52.3463 673.741 670 18.7875 663.8 664 16.539 46.5873 356.926 356 14.5917 354.49 354 12.262 -0.0506187 0
6 78.4459 689.542 689.5 16.4765 665.974 668 18.7865 58.6122 362.542 364 10.249 356.033 355 13.762 -0.126582 0
7 32.4261 667.08 668 21.3813 668.186 670 16.6344 44.0429 357.96 353 16.5768 356.323 356 11.4037 0.132981 0
8 1782.53 1374.87 1360 54.0415 668.523 668 14.9707 1629.44 1057.91 1062 40.9056 355.858 355 12.8556 -0.0389975 -0.129546891
9 305.207 793.519 795 22.5258 672.868 673 17.7237 284.987 456.185 454 15.4099 357.258 357 11.9069 -0.029769 -0.098890477
10 150.76 729.08 730 18.4208 672.281 671 16.9855 171.611 408.32 407 16.8862 359.541 359 12.169 0.0562579 0.186884699
11 52.5678 682.667 678 23.1134 672.549 672.5 18.1755 63.4562 368.111 369 17.7576 359.895 359 13.9554 0.0817539 0
12 30444.4 12790.4 12857 1559.43 669.411 668 18.7869 40346.3 18385 18888 2536.02 359.603 358 12.8704 0.122296 0.406258518
13 1281.38 1172.52 1176 49.9593 668.523 668 15.0731 1036.53 796.2 800 46.7654 355.477 355 12.6422 -0.0920936 -0.305928317
14 79.5626 698 699 18.1934 673.901 674 18.0466 80.2387 373.36 374 14.8208 359.375 356.5 15.6467 0.00367462 0
15 10875.2 5071.27 4985 389.146 672.31 672 17.1144 7476 3622.55 3572 306.605 354.303 354 12.0332 -0.16277 -0.540710236
16 66.1245 692.889 693 8.07967 675.715 675 18.5305 88.1422 374.222 373.5 17.8476 357.536 357 14.6546 0.124821 0
17 213.269 763.962 759.5 16.3865 673.032 673 15.2572 65.678 365.962 362 15.3375 356.506 356 13.5706 -0.511508 0
18 90.69 706.043 702 22.141 676.233 679 17.7648 76.4131 369.739 372 14.3787 357.048 356.5 13.2833 -0.074392 0
19 98.7826 708.4 705 17.4428 675.085 675 16.1368 117.443 381.48 377 13.3981 354.091 354 12.7398 0.0751456 0.24962828
20 142.985 730.667 735 20.9278 677.032 678 18.3853 155.954 397.083 393.5 18.1944 354.519 354 13.5592 0.0377074 0.125261271

Total number of rows: 16281

Table truncated, full table size 1909 Kbytes.




Supplementary data files not provided
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