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Sample GSM4633 Query DataSets for GSM4633
Status Public on Feb 27, 2003
Title 6hr Sal-DG vs 6hr MK-DG
Sample type RNA
 
Channel 1
Source name DG Hippocampus, 6hr Sal-DG was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name DG Hippocampus, 6hr MK-DG was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Sal: Saline. Young male C57BL/6J mice received an injection of saline (5 microL per g body weight). RNA from control mice were extracted 6hr after MK experimental mice received their last shock treatment.
MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 6hr after MK experimental mice received their last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE316 Sal-DG vs MK-DG
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 177614 65517.1 65517 0.765607 725.417 712.5 54.4833 144100 65517 65517 0.894427 443.708 425.5 59.1643 -0.0908126 0
2 45.9296 690.852 692 18.0186 688.073 687 17.5382 85.2373 420.667 421 16.5808 396.987 396 16.2735 0.268537 0
3 63.8916 685.56 683 15.9167 675.372 675 20.1208 76.8736 409.04 409 20.026 388.566 389 13.4008 0.0803332 0
4 70.1169 691.24 691 23.0891 678.484 679 16.9884 73.8265 410.2 413 20.3552 390.912 392 17.8618 0.0223895 0
5 60.1143 681.25 676.5 21.0098 672.551 670 17.2861 64.8353 400.375 405.5 14.9748 384.755 385 12.9629 0.032834 0
6 112.944 699.68 706 16.1702 669.389 668 16.4409 120.358 420.76 427 18.1137 382.752 383 14.102 0.0276113 0
7 59.7519 678.731 677 17.6738 670.156 669 18.905 60.5126 398.731 396 21.1671 384.844 385 15.5958 0.00549381 0
8 1758.34 1338.89 1333.5 44.9208 668.55 665.5 19.6436 1709.07 1087.96 1088.5 48.1714 376.781 377 17.7816 -0.0123423 -0.041000233
9 273.983 752.8 753 24.2023 657.993 658 19.7717 326.158 493.92 490 24.0346 371.461 371 16.1265 0.0757043 0.251484241
10 168.114 703.464 703 21.3533 650.531 649 22.9566 245.993 455.714 455.5 24.9026 367.381 369 18.0659 0.165319 0.549177831
11 98.328 677.92 679 25.4541 653.671 653 23.1638 114.687 405.64 406 19.1722 369.89 370 16.2499 0.0668381 0
12 27827.2 11328.4 11177.5 1422.17 661.131 662 22.455 36546.2 16052.3 15511 2456.52 374.875 373.5 17.2913 0.118373 0.393226594
13 1322.74 1161.39 1168 55.1162 662.881 663 20.782 955.884 767.348 766 43.2368 372.649 370 14.1879 -0.141069 -0.468621074
14 106.864 702.429 706 24.0992 674.64 675 19.4851 142.245 426.643 427 15.8095 379.919 380 14.671 0.124206 0
15 9407.78 4364.4 4063 509.331 685.212 685 17.612 7364.98 3466.96 3329 425.878 387.119 385 14.5629 -0.106316 -0.353174107
16 113.963 713.308 716 22.9482 682.583 681 17.9087 134.596 426.731 424.5 19.9029 383.058 383 13.2977 0.0722703 0.24007674
17 290.788 791.8 789 20.8507 688.467 686.5 19.1699 157.154 436.68 437 18.9621 383.76 383 15.824 -0.267252 -0.887791927
18 133.246 728.462 726.5 17.9471 689.733 689 19.0561 141.549 436.808 433.5 22.3339 390.397 390 18.4001 0.0262511 0.087204267
19 110.319 711.577 716 23.2984 682.358 681 15.8834 139.689 427.577 422.5 20.2942 381.874 380 15.3943 0.102514 0.340544137
20 164.164 731.741 726 17.0172 680.25 682 15.6015 192.409 448.185 443 19.1433 381.48 381 14.2944 0.0689485 0.229041959

Total number of rows: 16281

Table truncated, full table size 1914 Kbytes.




Supplementary data files not provided
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