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Sample GSM468646 Query DataSets for GSM468646
Status Public on Feb 01, 2010
Title mit1-mutant-expression_replicate2
Sample type RNA
 
Source name fission yeast
Organism Schizosaccharomyces pombe
Characteristics strain: HU1295
genome/variation: mit1 mutant
Extracted molecule total RNA
Extraction protocol Total RNA preparations according to the hot phenol method (Xue,Y. et al.PMID 14745780).
Label biotin
Label protocol RNA labeling was performed at BEA Novum http://www.bea.ki.se/
 
Hybridization protocol Hybridization was performed at BEA Novum http://www.bea.ki.se/
Scan protocol Scanning was performed by at BEA Novum http://www.bea.ki.se/
Description mit1-2.CEL
Data processing Raw data was processed using R/Bioconductor. Normalization and probeset expression values were calculated using GCRMA.
 
Submission date Nov 06, 2009
Last update date Jan 31, 2010
Contact name Tobias Straub
E-mail(s) tstraub@med.uni-muenchen.de
Organization name LMU Munich
Department Biomedical Center, Bioinformatics
Street address GroƟhadener Str. 9
City Martinsried
ZIP/Postal code 82152
Country Germany
 
Platform ID GPL2529
Series (1)
GSE16040 S. pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from S. cerevisiae

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal intensity

Data table
ID_REF VALUE
1769308_at 2.0892
1769309_at 11.1401
1769310_at 12.0385
1769311_at 2.0892
1769312_at 2.0892
1769313_at 2.0892
1769314_at 2.0892
1769315_at 10.0018
1769316_s_at 13.3306
1769317_at 2.0892
1769318_at 7.7923
1769319_at 2.0892
1769320_at 2.0892
1769321_at 2.0892
1769322_s_at 2.0892
1769323_at 2.0892
1769324_at 2.0892
1769325_at 2.0892
1769326_at 14.2359
1769327_at 10.6501

Total number of rows: 10928

Table truncated, full table size 196 Kbytes.




Supplementary file Size Download File type/resource
GSM468646.CEL.gz 1.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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