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| Status |
Public on Nov 17, 2009 |
| Title |
Control 2 (29.Control2) |
| Sample type |
genomic |
| |
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| Source name |
Control 2 (29.Control2)
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| Organism |
Homo sapiens |
| Characteristics |
gender: female
age: 31
ethnicity: White
cell type: white blood cell
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA was isolated from white blood cells by standard procedures
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
n/a
|
| Data processing |
Standard Illumina processing protocol
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| |
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| Submission date |
Nov 16, 2009 |
| Last update date |
Nov 16, 2009 |
| Contact name |
Esteban Ballestar |
| Organization name |
Josep Carreras Research Institute (IJC)
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| Lab |
Epigenetics and Immune Disease
|
| Street address |
Ctra de Can Ruti, Camà de les Escoles s/n
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| City |
Badalona, Barcelona |
| State/province |
N/A = Not Applicable |
| ZIP/Postal code |
08916 |
| Country |
Spain |
| |
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| Platform ID |
GPL9183 |
| Series (1) |
| GSE19033 |
Changes in the Pattern of DNA Methylation Associate with Twin Discordance in SLE |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
average beta value = Max(Cy5,0)/[Max(Cy3,0) + Max(Cy5,0) + 100] |
| Detection pval |
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| Data table |
| ID_REF |
VALUE |
Detection pval |
| AATK_E63_R |
0.94725 |
3.68E-38 |
| AATK_P519_R |
0.94098 |
3.68E-38 |
| AATK_P709_R |
0.90349 |
9.33E-14 |
| ABCA1_E120_R |
0.0161 |
8.76E-37 |
| ABCA1_P45_F |
0.0202 |
4.98E-23 |
| ABCB4_E429_F |
0.93857 |
3.68E-38 |
| ABCB4_P51_F |
0.91917 |
2.05E-32 |
| ABCB4_P892_F |
0.89334 |
6.49E-31 |
| ABCC2_E16_R |
0.95475 |
3.68E-38 |
| ABCC2_P88_F |
0.95858 |
3.68E-38 |
| ABCC5_P444_F |
0.02115 |
3.68E-38 |
| ABCG2_P178_R |
0.03639 |
3.68E-38 |
| ABCG2_P310_R |
0.01294 |
1.80E-22 |
| ABL1_P53_F |
0.06372 |
1.09E-22 |
| ABL2_P459_R |
0.01982 |
3.68E-38 |
| ABO_E110_F |
0.02282 |
3.48E-35 |
| ABO_P312_F |
0.07622 |
0.000222577 |
| ACTG2_E98_R |
0.9222 |
3.21E-10 |
| ACTG2_P346_F |
0.90678 |
3.68E-38 |
| ACTG2_P455_R |
0.93667 |
1.23E-37 |
Total number of rows: 1505
Table truncated, full table size 43 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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