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| Status |
Public on Nov 17, 2009 |
| Title |
Control 1 (16.Control1) |
| Sample type |
genomic |
| |
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| Source name |
Control 1 (16.Control1)
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| Organism |
Homo sapiens |
| Characteristics |
gender: male
age: 33
ethnicity: Black/AA
cell type: white blood cell
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA was isolated from white blood cells by standard procedures
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
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| Scan protocol |
Standard Illumina scanning protocol
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| Description |
n/a
|
| Data processing |
Standard Illumina processing protocol
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| |
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| Submission date |
Nov 16, 2009 |
| Last update date |
Nov 16, 2009 |
| Contact name |
Esteban Ballestar |
| Organization name |
Josep Carreras Research Institute (IJC)
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| Lab |
Epigenetics and Immune Disease
|
| Street address |
Ctra de Can Ruti, Camà de les Escoles s/n
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| City |
Badalona, Barcelona |
| State/province |
N/A = Not Applicable |
| ZIP/Postal code |
08916 |
| Country |
Spain |
| |
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| Platform ID |
GPL9183 |
| Series (1) |
| GSE19033 |
Changes in the Pattern of DNA Methylation Associate with Twin Discordance in SLE |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
average beta value = Max(Cy5,0)/[Max(Cy3,0) + Max(Cy5,0) + 100] |
| Detection pval |
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| Data table |
| ID_REF |
VALUE |
Detection pval |
| AATK_E63_R |
0.94842 |
3.68E-38 |
| AATK_P519_R |
0.94932 |
3.68E-38 |
| AATK_P709_R |
0.89858 |
5.71E-16 |
| ABCA1_E120_R |
0.01881 |
1.74E-32 |
| ABCA1_P45_F |
0.01983 |
3.47E-24 |
| ABCB4_E429_F |
0.93854 |
3.68E-38 |
| ABCB4_P51_F |
0.9135 |
7.21E-37 |
| ABCB4_P892_F |
0.89197 |
4.12E-35 |
| ABCC2_E16_R |
0.95485 |
3.68E-38 |
| ABCC2_P88_F |
0.95793 |
3.68E-38 |
| ABCC5_P444_F |
0.02419 |
3.68E-38 |
| ABCG2_P178_R |
0.03271 |
3.68E-38 |
| ABCG2_P310_R |
0.01526 |
3.22E-30 |
| ABL1_P53_F |
0.0798 |
3.39E-24 |
| ABL2_P459_R |
0.02047 |
3.68E-38 |
| ABO_E110_F |
0.02163 |
3.68E-38 |
| ABO_P312_F |
0.0763 |
9.33E-07 |
| ACTG2_E98_R |
0.9172 |
3.44E-12 |
| ACTG2_P346_F |
0.90327 |
3.68E-38 |
| ACTG2_P455_R |
0.92073 |
2.99E-32 |
Total number of rows: 1505
Table truncated, full table size 43 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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