 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Oct 10, 2020 |
| Title |
SARS-CoV-2 infected Vero Cells at day 0 (control), replicate 2 |
| Sample type |
SRA |
| |
|
| Source name |
kidney
|
| Organism |
Chlorocebus aethiops |
| Characteristics |
cell type: Cell line
treatment: 0 hours after SARS-CoV-2 infection
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Plus Mini Kit
Truseq Stranded Total RNA Gold kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
STAR ver. 2.6.1
RSEM ver. 1.3.1
Genome_build: Chlab1.1, NC_045512.2, yeast ENO2 cDNA (SGD:YHR174W), U13369.1
Supplementary_files_format_and_content: Matrix table with each colum indicating gene id, transcript id, gene length, gene effective length, raw count, TPM, and FPKM.
|
| |
|
| Submission date |
Oct 09, 2020 |
| Last update date |
Oct 10, 2020 |
| Contact name |
Young Seok Ju |
| E-mail(s) |
ysju@kaist.ac.kr
|
| Organization name |
KAIST
|
| Street address |
Daehak-ro 293
|
| City |
Daejeon |
| ZIP/Postal code |
34141 |
| Country |
South Korea |
| |
|
| Platform ID |
GPL22096 |
| Series (1) |
| GSE159316 |
Three-dimensional human alveolar stem cell culture models reveal infection response to SARS-CoV-2 |
|
| Relations |
| BioSample |
SAMN16406839 |
| SRA |
SRX9271254 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4826502_Vero_Day0_2_S2_rsem_1exon.genes.results.txt.gz |
386.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
