NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4831405 Query DataSets for GSM4831405
Status Public on May 14, 2022
Title LOUCY cell line with MEF2C and ICN construct, no overexpression. Replicate 2 [M_ICN-2]
Sample type RNA
 
Source name LOUCY cell line with MEF2C and ICN construct, no overexpression
Organism Homo sapiens
Characteristics cell line: LOUCY
genotype/variation: MEF2C and ICN construct, no overexpression
treatment: without doxycyline
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to manufacturer's instructions
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Data processing Data analysis was performed in R version 3.6.3. The Affy package, version 1.64.0, was used for Robust Multichip Average (RMA) normalization.
 
Submission date Oct 18, 2020
Last update date May 14, 2022
Contact name Rico Hagelaar
E-mail(s) R.Hagelaar@prinsesmaximacentrum.nl
Organization name Princess Maxima Center
Street address Heidelberglaan 25
City Utrecht
ZIP/Postal code 3584CS
Country Netherlands
 
Platform ID GPL570
Series (2)
GSE159506 The MEF2C oncogene opposes Notch signalling in T versus B lineage decision and drives leukemia in the thymus context [array]
GSE160409 The MEF2C oncogene opposes Notch signalling in T versus B lineage decision and drives leukemia in the thymus context

Data table header descriptions
ID_REF
VALUE Log2 RMA signal

Data table
ID_REF VALUE
1007_s_at 4.89354910059807
1053_at 8.59139796226879
117_at 4.79586634116261
121_at 6.92850291046919
1255_g_at 2.40573841601437
1294_at 7.8985041170589
1316_at 5.29371145323013
1320_at 3.20332665285611
1405_i_at 2.25593482247814
1431_at 5.65919456483944
1438_at 4.72864320437809
1487_at 7.4628168189474
1494_f_at 4.82225905266938
1552256_a_at 7.54318723967567
1552257_a_at 8.68404838316763
1552258_at 5.10965017181818
1552261_at 4.03832586280948
1552263_at 7.39816707288138
1552264_a_at 8.17512597334172
1552266_at 1.95584826453698

Total number of rows: 54675

Table truncated, full table size 1479 Kbytes.




Supplementary file Size Download File type/resource
GSM4831405_Array20.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap