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GEO accession:
Sample GSM4837580
Query DataSets for GSM4837580
Status
Public on Oct 21, 2020
Title
A1
Sample type
genomic
Source name
hybrid between MDA231-MB-231 and SUM159PT, subclone A1
Organism
Homo sapiens
Characteristics
cell line: hybrid between MDA231-MB-231 and SUM159PT
cell type: cell line
sample group: G1
Growth protocol
Cell were grown in the corresponding media in standard conditions
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNAeasy
Label
C-Bio and A-DNP
Label protocol
As per manufacturer (Illumina)
Hybridization protocol
As per manufacturer (Illumina)
Scan protocol
As per manufacturer (Illumina)
Data processing
Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
Submission date
Oct 20, 2020
Last update date
Oct 21, 2020
Contact name
Daria Miroshnychenko
E-mail(s)
daria.miroshnychenko@moffitt.org
Organization name
Moffitt Cancer Center
Department
Cancer Physiology
Lab
Marusyk Lab
Street address
12902 USF Magnolia Drive
City
TAMPA
State/province
FL
ZIP/Postal code
33612
Country
USA
Platform ID
GPL29257
Series (2)
GSE159679
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [1]
GSE159681
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations
Data table header descriptions
ID_REF
VALUE
Genotype Call (SNP call): AA, AB, BB, NC
A1.Score
A1.Theta
A1.R
A1.B Allele Freq
A1.Log R Ratio
A1.CNV Value
A1.CNV Confidence
Data table
ID_REF
VALUE
A1.Score
A1.Theta
A1.R
A1.B Allele Freq
A1.Log R Ratio
A1.CNV Value
A1.CNV Confidence
rs1000002
AA
0.1880978
0.3863013
0.8774353
0.2290355
-0.1167005
2
rs1000003
AA
0.2351214
0.2388611
1.194053
0.06048803
-0.1813931
3
612.8207
rs10000030
BB
0.1906378
0.8488606
0.4911112
1
-0.07727461
2
rs10000037
BB
0.4199027
0.9585506
0.8661198
1
-0.002689132
2
rs10000041
AA
0.430068
0.2583882
1.36708
0.05976287
-0.1021238
3
60.5359
rs1000007
AA
0.396179
0.2734265
1.28469
0.03518474
0.1111089
2
rs1000016
AA
0.2035265
0.3168401
0.6743739
0.01227919
-0.1442099
2
rs10000180
NC
0.145595
0.758864
0.5956818
0.7361643
-0.09797144
2
rs10000272
AA
0.5249108
0.007854021
1.007328
0
-0.08239519
2
rs1000031
AA
0.3496598
0.02533029
1.012387
0.005064221
-0.06678878
2
rs10000432
AA
0.4817017
0.08514936
0.3115047
0.02970803
-0.2463048
2
rs10000438
AA
0.5001162
0.02483878
0.6106359
0
-0.06514502
3
143.9419
rs1000047
AB
0.5947514
0.6081309
0.7088603
0.5282747
-0.07372572
2
rs10000471
AA
0.1998202
0.328171
0.5598934
0.02375508
-0.2455907
2
rs1000068
BB
0.5147853
0.9835429
1.053676
1
0.01931738
2
rs10000708
NC
0.1465269
0.5091624
1.664499
0.6085188
0.1186878
2
rs10000852
AB
0.2428873
0.5734463
1.233409
0.4217005
0.04501287
3
82.87621
rs1000087
AB
0.3419139
0.3554188
0.7953758
0.4709271
0.03924523
2
rs1000094
AA
0.4668699
0.2176966
1.361109
0.04792984
0.146209
2
rs10000976
BB
0.4960868
0.7603635
0.8626129
0.8510723
-0.02144733
2
Total number of rows:
293869
Table truncated, full table size
18458 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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