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GEO accession:
Sample GSM4837584
Query DataSets for GSM4837584
Status
Public on Oct 21, 2020
Title
A9
Sample type
genomic
Source name
hybrid between MDA231-MB-231 and SUM159PT, subclone A9
Organism
Homo sapiens
Characteristics
cell line: hybrid between MDA231-MB-231 and SUM159PT
cell type: cell line
sample group: G5
Growth protocol
Cell were grown in the corresponding media in standard conditions
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNAeasy
Label
C-Bio and A-DNP
Label protocol
As per manufacturer (Illumina)
Hybridization protocol
As per manufacturer (Illumina)
Scan protocol
As per manufacturer (Illumina)
Data processing
Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
Submission date
Oct 20, 2020
Last update date
Oct 21, 2020
Contact name
Daria Miroshnychenko
E-mail(s)
daria.miroshnychenko@moffitt.org
Organization name
Moffitt Cancer Center
Department
Cancer Physiology
Lab
Marusyk Lab
Street address
12902 USF Magnolia Drive
City
TAMPA
State/province
FL
ZIP/Postal code
33612
Country
USA
Platform ID
GPL29257
Series (2)
GSE159679
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [1]
GSE159681
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations
Data table header descriptions
ID_REF
VALUE
Genotype Call (SNP call): AA, AB, BB, NC
A9.Score
A9.Theta
A9.R
A9.B Allele Freq
A9.Log R Ratio
A9.CNV Value
A9.CNV Confidence
Data table
ID_REF
VALUE
A9.Score
A9.Theta
A9.R
A9.B Allele Freq
A9.Log R Ratio
A9.CNV Value
A9.CNV Confidence
rs1000002
AA
0.4580384
0.3337343
0.9129286
0.1414575
-0.05601517
2
rs1000003
AA
0.2351214
0.03959024
1.170302
0
-0.0290605
2
rs10000030
BB
0.1906378
0.6775354
0.6203681
0.9619581
0.1688037
2
rs10000037
BB
0.4199027
0.9270487
0.9255927
0.9880146
0.07064476
2
rs10000041
AA
0.430068
0.2027095
1.582625
0
0.1087605
2
rs1000007
AA
0.3913042
0.3200392
1.150429
0.1346413
-0.04071622
2
rs1000016
AA
0.2035265
0.3522502
0.7496789
0.06480447
-0.02310196
3
114.8623
rs10000180
AB
0.4234854
0.5787949
0.76929
0.5071596
0.2172052
2
rs10000272
AA
0.5249108
0.01144535
1.206706
0.001892764
0.1756778
2
rs1000031
AB
0.3494173
0.3965465
1.226677
0.5528896
-0.09409715
2
rs10000432
AA
0.4817017
0.04297983
0.409122
0
0.1704682
2
rs10000438
AA
0.5001162
0.02942299
0.7147202
0
0.1590461
2
rs1000047
AB
0.5947514
0.589085
0.808159
0.5030241
0.1090945
2
rs10000471
AA
0.1998202
0.2455029
0.8016317
0
0.3466967
2
rs1000068
BB
0.5147853
0.9821789
1.011562
1
-0.04062219
2
rs10000708
AB
0.4304765
0.3937738
1.708959
0.5109363
0.08676746
2
rs10000852
AB
0.2796703
0.6117275
1.327792
0.4516085
0.1350518
2
rs1000087
AB
0.2635861
0.2651803
0.7512603
0.3446902
0.07835932
2
rs1000094
AA
0.4668699
0.2167045
1.19585
0.04604097
-0.04051562
2
rs10000976
BB
0.5336784
0.8318125
0.9102101
0.9551712
0.08253663
2
Total number of rows:
293869
Table truncated, full table size
18824 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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