|
| Status |
Public on Dec 05, 2020 |
| Title |
B(HT-3) |
| Sample type |
SRA |
| |
|
| Source name |
broiler liver
|
| Organism |
Gallus gallus |
| Characteristics |
treatment type: high temperature
tissue: liver
|
| Treatment protocol |
high temperature treatment
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Not provided
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
G15 CUT&Tag (High)
|
| Data processing |
Library strategy: CUT&Tag
cutadapt (v1.9.2) software was used for adaptor-trimming and low quality reads removing to get clean reads. Then clean reads were aligned to reference genome (UCSC galGal6) using bowtie2 software (v2.2.4) with default parameters. Peak calling was performed with MACS software (v1.4.3).
Genome_build: galGal6
Supplementary_files_format_and_content: bed peaks
|
| |
|
| Submission date |
Dec 04, 2020 |
| Last update date |
May 09, 2022 |
| Contact name |
Ding Yu |
| E-mail(s) |
ding@rnastar.com
|
| Organization name |
Newcore biotechnology
|
| Street address |
Number 953 Jianchuan Road
|
| City |
Shanghai |
| ZIP/Postal code |
200000 |
| Country |
China |
| |
|
| Platform ID |
GPL26853 |
| Series (1) |
| GSE162661 |
CUT&Tag for analysis of Nrf2-regulated genes in liver of heat-stressed chicken (Gallus gallus) |
|
| Relations |
| BioSample |
SAMN17001974 |
| SRA |
SRX9632456 |
