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Sample GSM507 Query DataSets for GSM507
Status Public on Jul 30, 2001
Title 20min UVtreatment control, MG1655 in Davis+0.4%glu
Sample type RNA
 
Channel 1
Source name 20min untreatedcells, 25 ug total RNA
Organism Escherichia coli
Extracted molecule total RNA
 
Channel 2
Source name untreated cells, 25 ug total RNA
Organism Escherichia coli
Extracted molecule total RNA
 
 
Description Category: DNA damage
Subcategory: UV radiation
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = uv20cntrl
 
Submission date Jul 30, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE9 UV Exposure in Wild-Type and SOS-Deficient E. coli

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1960 1929 11837 20059 18350 1740 1709 1871 20088 21959 0 0 .763 1.49 65 69 .645 .589 1.55 1.697 0 1158 256 125 143 56 74 .763
2 1958 1927 10767 16884 15188 1732 1696 1857 16627 18484 0 0 .627 1.381 65 69 .709 .648 1.411 1.544 0 1052 256 124 142 78 96 .627
3 1955 1927 7839 11048 9333 1763 1715 1877 10217 12095 0 0 .382 1.129 66 69 .84 .767 1.191 1.303 0 1060 256 124 142 100 118 .382
4 1988 1963 9223 14726 12962 1814 1764 1931 14190 16121 0 0 .622 1.347 65 69 .712 .65 1.405 1.539 0 1053 256 124 142 123 141 .622
5 1952 1953 9966 16596 14843 1769 1753 1919 16249 18168 0 0 .705 1.456 67 71 .671 .613 1.489 1.63 0 1027 256 124 142 145 163 .705
6 1912 1913 10323 17397 15675 1728 1722 1885 17160 19045 0 0 .733 1.506 64 69 .659 .602 1.518 1.662 0 1027 256 124 142 167 185 .733
7 1896 1900 4 1750 38 1723 1712 1874 42 1916 .095 0 3.379 .887 0 0 .105 .096 9.5 10.4 .094 1027 256 124 142 189 207 3.379
8 1944 1927 1736 1893 1785 1954 -54 1900 .058 0 .83 0 0 .056 1043 256 124 142 211 229
9 2032 1988 13 1795 1989 1848 2023 -58 1965 .059 0 .794 0 0 .049 1094 256 123 141 233 251
10 2018 1981 1891 53 1891 1838 2012 58 2070 -.036 0 1.227 0 0 -.053 1073 256 123 141 255 273
11 1952 1946 46 1861 31 1831 1830 2003 34 2037 .089 0 -.439 1.029 0 0 1.484 1.355 .674 .738 .079 1045 256 123 141 278 296 -.439
12 1945 1933 1794 1794 1797 1967 -3 1964 .021 0 .875 0 0 .019 1027 256 123 141 300 318
13 1922 1913 1763 1783 1783 1952 -22 1930 .02 0 .843 0 0 .018 1027 256 123 141 322 340
14 1926 1916 81 1881 44 1828 1837 2011 48 2059 .194 0 -.75 .894 0 0 1.841 1.682 .543 .595 .195 1027 256 123 141 344 362 -.75
15 1968 1959 36 1924 33 1891 1891 2070 36 2106 .03 0 .005 1.189 0 0 1.091 .997 .917 1.004 .029 1027 256 123 141 366 384 .005
16 2011 1996 1953 33 1930 1920 2102 36 2138 .072 0 1.118 0 0 .066 1078 256 122 140 388 406
17 2040 2030 1988 52 1957 1936 2119 57 2176 .039 0 .814 0 0 .067 1059 256 122 140 411 429
18 2034 2017 54 2020 58 1978 1962 2148 63 2211 .091 0 .234 .802 0 0 .931 .85 1.074 1.176 .079 1184 256 122 140 433 451 .234
19 1939 1898 1584 1652 1609 1761 -27 1734 .085 0 .716 0 0 .072 1035 256 147 165 56 74
20 1993 1890 40 1699 108 1679 1591 1742 118 1860 .401 0 1.564 1.438 1 3 .37 .338 2.7 2.956 .468 898 256 147 165 78 96 1.564

Total number of rows: 4896

Table truncated, full table size 628 Kbytes.




Supplementary data files not provided
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