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Sample GSM50979 Query DataSets for GSM50979
Status Public on Jul 03, 2005
Title HFL-1
Sample type genomic
 
Channel 1
Source name Sonicated DNA input material for MeDIP
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name DNA Methylation-dependent immunoprecipitated (MeDIP) probes
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Male primary lung fibroblast DNA enriched via a monoclonal antibody against 5-methylcytidine co-hybridized against the original input DNA
Keywords = Normal male methylation profile
 
Submission date May 13, 2005
Last update date Jun 20, 2005
Contact name Jon Davies
E-mail(s) jdavies@bccrc.ca
Phone 604-675-8000 x7703
Organization name BC Cancer Research Centre
Street address 675 W 10th Ave
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL2043
Series (1)
GSE2664 Epigenomic profiles

Data table header descriptions
ID_REF
Spot Mean Intensity (Cy3) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (Cy5) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (Cy3) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (Cy5) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (Cy3) Spot Mean - Background Median
Spot Normalized Intensity (Cy5) Spot Mean - Background Median
Spot SNR (Cy3) Signal to noise ratio - Cy3
Spot SNR (Cy5) Signal to noise ratio - Cy5
Spot Ratio (Cy3) Cy3/Cy5
Spot Ratio (Cy5) Cy5/Cy3
Spot Log2 Ratio (Cy3) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (Cy3) Spot Mean Intensity (Cy5) Background Median Intensity (Cy3) Background Median Intensity (Cy5) Spot Normalized Intensity (Cy3) Spot Normalized Intensity (Cy5) Spot SNR (Cy3) Spot SNR (Cy5) Spot Ratio (Cy3) Spot Ratio (Cy5) Spot Log2 Ratio (Cy3) VALUE
1 12192.57 6698.1 939 2135 11253.57 4563.1 207.1106 23.30671 1.516323 0.6594099 0.6005773 -0.6007524
2 9824.79 5448.58 947 2134 8877.79 3314.58 207.0974 40.4325 1.646785 0.60717 0.7196525 -0.7198275
3 14814.97 8549.53 931 2132 13883.97 6417.53 329.794 108.5913 1.330171 0.7516921 0.4116113 -0.4117863
4 12800.03 7722.87 898 2096 11902.03 5626.87 331.184 55.2041 1.300514 0.7688333 0.3790823 -0.3792574
5 9483.85 4856.52 900 2086 8583.85 2770.524 263.0892 66.084 1.904941 0.5248871 0.929746 -0.929921
6 10756.45 6080.31 912 2077 9844.45 4003.31 222.9243 68.1447 1.511938 0.6613227 0.5963987 -0.5965737
7 14139.57 7655.36 920 2095 13219.57 5560.36 294.4095 100.9417 1.461759 0.6840242 0.5477056 -0.5478806
8 9514.6 5553.87 895 2087 8619.6 3466.87 208.9475 46.8729 1.528661 0.6540881 0.6122681 -0.6124432
9 9544.91 5733.84 906.5 2086.5 8638.41 3647.34 351.231 52.7618 1.456193 0.6866387 0.5422018 -0.5423769
10 11342.87 6862.77 900 2118 10442.87 4744.77 294.5607 83.8626 1.353211 0.7388935 0.4363866 -0.4365617
11 10435.99 6147.66 900 2112 9535.99 4035.66 253.1167 62.3697 1.452821 0.6882327 0.5388564 -0.5390315
12 11036.08 6149.07 921 2116 10115.08 4033.07 225.7073 53.7633 1.542036 0.6484146 0.6248365 -0.6250116
13 9999.85 6158.28 921 2114 9078.85 4044.28 204.1909 64.0481 1.380226 0.7244309 0.464905 -0.4650801
14 10825.17 6913.23 925 2119 9900.17 4794.23 119.3654 65.6472 1.269653 0.7875212 0.3444342 -0.3446093
15 11405.98 7210.25 915 2129 10490.98 5081.25 135.3585 70.392 1.269422 0.7876642 0.3441723 -0.3443474
16 11521.49 7655.38 973 2155.5 10548.49 5499.88 175.0511 84.2134 1.179229 0.8479085 0.2378443 -0.2380194
17 10973.02 6163 1069 2176 9904.02 3987 3.89946 6.57565 1.527308 0.6546674 0.6109907 -0.6111658
18 15357.81 7408.59 1274 2232 14083.81 5176.59 5.40025 8.27267 1.672777 0.5977359 0.7422449 -0.74242
19 8319.57 4778.73 1048 2144 7271.57 2634.732 29.74936 22.35723 1.696887 0.5892428 0.7628909 -0.7630659
20 928.535 2090.314 914.5 2082.5 14.03491 7.81396 0.01406078 0.03497555 1.104331 0.9054155 0.1431729 -0.143348

Total number of rows: 104544

Table truncated, full table size 10989 Kbytes.




Supplementary data files not provided
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