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| Status |
Public on May 24, 2005 |
| Title |
BCCRC Lam SMRT array 32k |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| |
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| Description |
A tiling resolution array of 32,433 overlapping BAC clones spanning the human genome
Keywords = SMRT tiling array
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| Web link |
http://www.bccrc.ca/arraycgh/
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| Citation(s) |
14981516 |
| Submission date |
May 13, 2005 |
| Last update date |
May 27, 2005 |
| Contact name |
Jon Davies |
| E-mail(s) |
jdavies@bccrc.ca
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| Phone |
604-675-8000 x7703
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| Organization name |
BC Cancer Research Centre
|
| Street address |
675 W 10th Ave
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| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V5Z 1L3 |
| Country |
Canada |
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| Samples (80)
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GSM50978, GSM50979, GSM62324, GSM62325, GSM62326, GSM62327
GSM62328, GSM62329, GSM62330, GSM62332, GSM62333, GSM62334, GSM62335, GSM62336, GSM62337, GSM62338, GSM62965, GSM62966, GSM62967, GSM62968, GSM62969, GSM62970, GSM62971, GSM63352, GSM63353, GSM63697, GSM69198, GSM69199, GSM69200, GSM156952, GSM157143, GSM232127, GSM232128, GSM232129, GSM232130, GSM232131, GSM232132, GSM232133, GSM232134, GSM232135, GSM232136, GSM232137, GSM232138, GSM232139, GSM232140, GSM232141, GSM232142, GSM232143, GSM232144, GSM232145, GSM232146, GSM232147, GSM232148, GSM232149, GSM232150, GSM232151, GSM232152, GSM232153, GSM232154, GSM232155, GSM232156, GSM232157, GSM232158, GSM232159, GSM232160, GSM232161, GSM232162, GSM232163, GSM232164, GSM232165, GSM232166, GSM232167, GSM232168, GSM232169, GSM232170, GSM232171, GSM232172, GSM232173, GSM284825, GSM284826
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| Series (6)
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| GSE2664 |
Epigenomic profiles |
| GSE2922 |
High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH |
| GSE3106 |
Breast Cancer Cell Lines |
| GSE7383 |
Frequent occurrence of deletions in primary mediastinal B-cell lymphoma |
| GSE9193 |
Oral dysplasias and oral squamous cell carcinoma |
| GSE11275 |
Tiling-set aCGH data for oral dysplasias and oral squamous cell carcinomas |
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| Data table header descriptions |
| ID |
|
| Array |
SMRT slide 1 or SMRT slide 2 |
| Locus ID |
Plate and well location of clone |
| Chromosome ID |
Chromosome number of clone |
| bp_start |
Starting position of clone |
| CLONE ID |
FPC number |
| GB_LIST |
GenBank accession numbers |
| SPOT_ID |
|
| bp_end |
End position of clone |
| Data table |
| ID |
Array |
Locus ID |
Chromosome ID |
bp_start |
CLONE ID |
GB_LIST |
SPOT_ID |
bp_end |
| 1 |
1 |
46a-H12 |
12 |
8524255 |
N0561P12 |
AC092746 |
|
8631570 |
| 2 |
1 |
46a-D24 |
10 |
9883120 |
N0561C14 |
|
Chr: 10[9883120..10048331] |
10048331 |
| 3 |
1 |
46a-D12 |
11 |
18659244 |
N0561A22 |
|
Chr: 11[18659244..18840732] |
18840732 |
| 4 |
1 |
45-P24 |
17 |
42089653 |
N0546M21 |
AC023855 |
|
42223638 |
| 5 |
1 |
45-P12 |
12 |
61801074 |
N0546K09 |
|
Chr: 12[61801074..62003913] |
62003913 |
| 6 |
1 |
45-L24 |
13 |
111973013 |
N0545B15 |
|
Chr: 13[111973013..112148960] |
112148960 |
| 7 |
1 |
45-L12 |
16 |
27887269 |
N0544O07 |
|
Chr: 16[27887269..28010421] |
28010421 |
| 8 |
1 |
45-H24 |
5 |
39327493 |
N0544D02 |
|
Chr: 5[39327493..39487669] |
39487669 |
| 9 |
1 |
45-H12 |
3 |
172834764 |
N0544A16 |
|
Chr: 3[172834764..172988014] |
172988014 |
| 10 |
1 |
45-D24 |
20 |
62387162 |
N0543D07 |
|
Chr: 20[62387162..62534101] |
62534101 |
| 11 |
1 |
45-D12 |
12 |
14880495 |
N0543A16 |
|
Chr: 12[14880495..15051266] |
15051266 |
| 12 |
1 |
44-P24 |
6 |
100129233 |
N0526L14 |
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Chr: 6[100129233..100311832] |
100311832 |
| 13 |
1 |
44-P12 |
10 |
14336152 |
N0526G05 |
AC069025 |
|
14545734 |
| 14 |
1 |
44-L24 |
2 |
73632704 |
N0525I20 |
|
Chr: 2[73632704..73799790] |
73799790 |
| 15 |
1 |
44-L12 |
9 |
117101858 |
N0525G07 |
AC006430 |
|
117296656 |
| 16 |
1 |
44-H24 |
X |
120683942 |
N0524K17 |
|
Chr: X[120683942..120841469] |
120841469 |
| 17 |
1 |
44-H12 |
5 |
95700073 |
N0524H15 |
AC011856, AC026143 |
|
95867430 |
| 18 |
1 |
44-D24 |
5 |
174991134 |
N0523O20 |
|
Chr: 5[174991134..175195154] |
175195154 |
| 19 |
1 |
44-D12 |
14 |
40650611 |
N0523I21 |
|
Chr: 14[40650611..40819470] |
40819470 |
| 20 |
1 |
43-P24 |
11 |
1476609 |
N0512B08 |
|
Chr: 11[1476609..1663356] |
1663356 |
Total number of rows: 104544
Table truncated, full table size 6762 Kbytes.
| Supplementary data files not provided |
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