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Sample GSM513313 Query DataSets for GSM513313
Status Public on Feb 25, 2010
Title 0 Dis II-URA3 (A23506)
Sample type genomic
 
Channel 1
Source name Dis II-URA3 (A23506)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis II-URA3 (A23506)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-10-02
Scan Time : 16:30:59
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis II-URA3 (A23506)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -1.12 1469.563 675.9727 7582.243 2013.784
2 0 2.945419 1.853933 104.0882 71.82353
3 0 2.936048 1.869448 94.61538 70.84615
4 -0.061 954.1965 914.4815 4998.684 2629.711
5 -0.147 1737.362 1568.748 9034.237 4425.132
6 -0.061 1015.156 973.4392 5334.421 2757.342
7 0.042 763.4502 785.8589 4048.538 2229.436
8 -0.42 1897.543 1418.692 9930.707 3945.122
10 0.111 1245.174 1344.392 6583.132 3715.342
11 -0.097 1578.102 1475.718 8343.694 4063.389
12 -0.141 1029.133 933.5641 5489.459 2592.811
13 -0.192 1490.446 1304.386 7922.282 3586.564
14 -0.407 696.3077 525.3213 3765.97 1488.424
15 0.022 586.6843 595.7696 3196.463 1676.805
16 -0.386 596.223 456.353 3254.611 1301.639
17 0.761 1229.882 2083.638 6625.237 5679.684
18 -0.313 842.1017 678.0658 4579.692 1899.821
19 -0.089 642.4923 604.0826 3526.447 1701.974
20 -0.712 1367.915 834.9622 7419.641 2328.487
21 -0.216 555.6839 478.4287 3083.425 1368.65

Total number of rows: 13048

Table truncated, full table size 598 Kbytes.




Supplementary file Size Download File type/resource
GSM513313.txt.gz 4.1 Mb (ftp)(http) TXT
Processed data included within Sample table
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