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Sample GSM513334 Query DataSets for GSM513334
Status Public on Feb 25, 2010
Title 0 Dis VIII-GFP-cup1-UBI4 (A25128)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis VIII-GFP-cup1-UBI4 (A25128)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis VIII-GFP-cup1-UBI4 (A25128)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-10-29
Scan Time : 09:21:43
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis VIII-GFP-cup1-UBI4 (A25128)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .318 661.3573 530.6925 22991.87 11531.74
2 .44 3.393607 2.502374 764.6875 461
3 0 2.344682 2.680284 710.3889 468.9167
4 -.063 348.3826 363.8115 10611 6635.676
5 .164 534.8188 477.3846 15200.41 8091.846
6 -.169 389.6762 438.1997 10747.58 7068.556
7 .009 564.9068 561.2611 14655.8 8488.633
8 -.332 713.1037 897.6354 17618.45 12717.11
10 -.073 467.9302 492.1096 10918.05 6548.974
11 -.255 897.9858 1071.433 19756 13298.66
12 -.211 765.5045 886.2496 16377.84 10654.43
13 .039 1301.084 1266.819 26619.88 14561.55
14 -.014 1007.074 1017.215 20134.23 11382.62
15 -.077 624.102 658.223 12345.84 7263.784
16 -.091 723.2088 770.2517 13866.24 8208.902
17 -.132 1193.1 1307.436 21998.47 13349.28
18 -.031 718.9878 734.7014 13175.87 7466.484
19 -.309 360.722 447.0323 6737.744 4567.538
20 -.274 1506.336 1822.023 25923.84 17247.95
21 -.305 628.874 776.7167 10944.89 7395.944

Total number of rows: 13048

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM513334.txt.gz 4.1 Mb (ftp)(http) TXT
Processed data included within Sample table
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