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Sample GSM513369 Query DataSets for GSM513369
Status Public on Feb 25, 2010
Title 0 WT-UBP6del; (A22024)
Sample type genomic
 
Channel 1
Source name WT-UBP6del (A22024)
Organism Saccharomyces cerevisiae
Characteristics strain name: WT-UBP6del (A22024)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-08-02
Scan Time : 13:27:09
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 WT-UBP6∆ (A22024)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Apr 30, 2013
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL7542
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.531 1879.584 1300.719 35576.92 15449.27
2 0 9.331608 7.754749 588.4231 432.6731
3 0 9.370497 8.125761 508.5424 398.4915
4 0 9.425731 8.491062 356.4828 349.5517
5 0 9.478933 8.829517 635.5254 384.1695
6 -0.393 14.84544 11.30596 792.0159 431.4127
7 0.308 16.17216 20.02297 809.3667 499.65
8 0.402 9.777431 12.92176 643.2459 425.7541
9 0.715 9.897713 16.24588 669.8806 444.4925
10 -0.094 27.21905 25.50913 980.0392 511.4706
11 0 10.15868 10.60647 473.2034 359.4068
12 0.291 818.8177 1001.788 14282.98 8192.98
13 0.277 1116.571 1352.99 19042.03 10773.75
14 0.416 955.0765 1274.672 16121.56 9994.123
15 0.05 1245.493 1289.014 20548.13 9942.952
16 0.211 1032.625 1195.585 16858.8 9119.929
17 0.109 948.8574 1023.103 15293.43 7756.623
18 0.612 828.2184 1266.005 13205.73 9435.016
19 1.195 303.5007 694.6441 5061.51 5247.49
20 0.47 804.8259 1114.403 12448.05 8194.417

Total number of rows: 45209

Table truncated, full table size 2097 Kbytes.




Supplementary file Size Download File type/resource
GSM513369.txt.gz 13.0 Mb (ftp)(http) TXT
Processed data included within Sample table
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