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Sample GSM518 Query DataSets for GSM518
Status Public on Jul 30, 2001
Title 0 min Nov0 ug/ml, dnaCacrD 30 min after synchr start
Sample type genomic
 
Channel 1
Source name dnaC fully replicated, 2 ug Say3AI, pdN6 RT
Organism Escherichia coli
Extracted molecule genomic DNA
 
Channel 2
Source name 0 min Nov0 ug/ml, 2 ug Say3AI, pdN6 RT
Organism Escherichia coli
Extracted molecule genomic DNA
 
 
Description Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov0_0
 
Submission date Jul 30, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE8 Topoisomerase function in E. coli replication fork movement

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 20 18 374 660 628 34 32 21 407 427 .962 0 .121 1.706 73 76 .596 .92 1.679 1.087 1.56 1158 256 65 83 80 98 .121
2 19 18 403 720 687 37 33 21 445 466 .957 0 .143 1.719 74 76 .587 .906 1.705 1.104 1.593 1060 256 64 82 102 120 .143
3 19 18 384 705 675 38 30 19 437 457 .956 0 .187 1.746 74 76 .569 .878 1.758 1.138 1.64 1067 256 64 82 124 142 .187
4 20 18 363 660 630 37 30 19 408 427 .947 0 .169 1.762 75 76 .576 .89 1.736 1.124 1.593 1067 256 64 82 146 164 .169
5 19 18 460 801 771 37 30 19 499 519 .957 0 .118 1.701 77 78 .597 .921 1.676 1.085 1.548 1060 256 64 82 168 186 .118
6 19 18 501 889 860 33 29 19 557 576 .945 0 .153 1.727 76 79 .583 .9 1.717 1.112 1.569 1060 256 64 82 190 208 .153
7 19 18 27 29 28 18 -1 17 .072 0 1 12 3 .085 1060 256 64 82 212 230
8 19 19 30 32 31 20 -1 19 .123 0 1 10 5 .155 1060 256 64 82 234 252
9 20 19 1 34 1 34 33 21 1 22 .097 0 -.627 1.25 16 11 1 1.544 1 .648 .14 1060 256 64 82 256 274 -.627
10 20 19 3 38 7 32 31 20 5 25 .947 0 .596 1.429 12 13 .429 .662 2.333 1.511 1.285 1060 256 64 82 278 296 .596
11 19 18 29 38 29 19 0 19 .175 0 1.417 12 8 .233 1060 256 64 82 300 318
12 44 17 27 98 28 18 -1 17 .119 0 1.5 11 6 .15 1078 256 64 82 322 340
13 42 16 26 92 28 18 -1 17 .038 0 1.1 10 2 .043 1064 256 64 82 345 363
14 18 17 11 63 32 32 31 20 21 41 .903 0 .914 1.647 23 22 .344 .531 2.909 1.884 2.112 1067 256 64 82 367 385 .914
15 28 18 30 56 32 21 -1 19 .248 0 1.25 7 4 .632 1080 256 64 82 389 407
16 28 18 32 59 32 21 0 21 .242 0 1.375 14 5 .513 1053 256 64 82 411 429
17 19 18 1 31 34 32 21 -1 20 .083 0 1.471 15 4 .108 1035 256 64 82 433 451
18 19 18 2 31 1 32 30 19 1 20 .849 0 -1.627 1.214 13 7 2 3.088 .5 .324 .758 1176 256 64 82 455 473 -1.627
19 21 19 35 1 39 34 22 1 23 -.129 0 1.333 13 4 -.151 1057 256 87 105 80 98
20 23 19 33 45 33 21 0 21 -.117 0 1.5 9 3 -.144 926 256 87 105 102 120

Total number of rows: 4896

Table truncated, full table size 573 Kbytes.




Supplementary data files not provided
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