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| Status |
Public on Nov 23, 2021 |
| Title |
E40_Pre-optic |
| Sample type |
SRA |
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| Source name |
primary brain tissue
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| Organism |
Macaca mulatta |
| Characteristics |
tissue: brain
region: POA
embryonic_day: 40
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
whole cells, dissociated using papain
10X chromium 3’ RNAseq V2/3
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
kallisto quantification RheMac10
cellbender ambient RNA removal
normalization, +1 log transform and scaling applied to h5ad X
Genome_build: RheMac10
Supplementary_files_format_and_content: MacaqueDevInhibitoryNeurons.h5ad contains normalized, log1p, and scaled data along with PCA and UMAP projections, obs.csv contains cell metadata, var.csv contains gene metadata, X.csv is the raw cells by genes kallisto + cellbender matrix
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| Submission date |
Mar 19, 2021 |
| Last update date |
Nov 23, 2021 |
| Contact name |
Alex A Pollen |
| E-mail(s) |
alex.pollen@ucsf.edu
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| Organization name |
UCSF
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| Department |
Neurology
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| Lab |
Alex Pollen
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| Street address |
35 Medical Center Way
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94132 |
| Country |
USA |
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| Platform ID |
GPL27943 |
| Series (1) |
| GSE169122 |
The Birth, Distribution and Evolution of Primate Cerebral Inhibitory Neurons |
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| Relations |
| BioSample |
SAMN18371117 |
| SRA |
SRX10386037 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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