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Sample GSM5183804 Query DataSets for GSM5183804
Status Public on Nov 23, 2021
Title E50_septum
Sample type SRA
 
Source name primary brain tissue
Organism Macaca mulatta
Characteristics tissue: brain
region: Septum
embryonic_day: 50
Extracted molecule polyA RNA
Extraction protocol whole cells, dissociated using papain
10X chromium 3’ RNAseq V2/3
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing kallisto quantification RheMac10
cellbender ambient RNA removal
normalization, +1 log transform and scaling applied to h5ad X
Genome_build: RheMac10
Supplementary_files_format_and_content: MacaqueDevInhibitoryNeurons.h5ad contains normalized, log1p, and scaled data along with PCA and UMAP projections, obs.csv contains cell metadata, var.csv contains gene metadata, X.csv is the raw cells by genes kallisto + cellbender matrix
 
Submission date Mar 19, 2021
Last update date Nov 23, 2021
Contact name Alex A Pollen
E-mail(s) alex.pollen@ucsf.edu
Organization name UCSF
Department Neurology
Lab Alex Pollen
Street address 35 Medical Center Way
City San Francisco
State/province CA
ZIP/Postal code 94132
Country USA
 
Platform ID GPL27943
Series (1)
GSE169122 The Birth, Distribution and Evolution of Primate Cerebral Inhibitory Neurons
Relations
BioSample SAMN18371475
SRA SRX10386047

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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