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Sample GSM522 Query DataSets for GSM522
Status Public on Jul 30, 2001
Title 7 min Nov0 ug/ml, dnaCacrD 30 min after synchr start
Sample type genomic
 
Channel 1
Source name dnaC fully replicated, 2 ug Say3AI, pdN6 RT
Organism Escherichia coli
Extracted molecule genomic DNA
 
Channel 2
Source name 7 min Nov0 ug/ml, 2 ug Say3AI, pdN6 RT
Organism Escherichia coli
Extracted molecule genomic DNA
 
 
Description Category: DNA metabolism
Subcategory: Replication
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = nov0_7
 
Submission date Jul 30, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE8 Topoisomerase function in E. coli replication fork movement

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 37 36 466 656 628 28 28 23 511 534 .899 0 .133 1.395 74 79 .742 .912 1.348 1.096 1.139 1166 256 69 87 114 132 .133
2 37 37 412 576 547 29 29 24 445 469 .884 0 .111 1.34 75 80 .753 .926 1.328 1.08 1.098 1020 256 70 88 136 154 .111
3 40 38 688 955 925 32 30 24 753 777 .906 0 .129 1.375 77 80 .744 .914 1.344 1.094 1.118 1035 256 70 88 158 176 .129
4 40 39 547 780 749 32 31 25 609 635 .903 0 .156 1.38 77 80 .73 .898 1.369 1.114 1.183 1020 256 71 89 180 198 .156
5 39 38 578 782 752 31 30 24 612 636 .937 0 .082 1.313 74 80 .769 .945 1.301 1.058 1.186 1035 256 71 89 202 220 .082
6 38 37 628 855 826 30 29 24 672 696 .918 0 .098 1.278 78 81 .76 .935 1.315 1.07 1.152 1020 256 72 90 224 242 .098
7 38 36 1 29 30 30 24 -1 24 .013 0 .714 9 5 .01 1011 256 72 90 246 264
8 40 38 30 31 30 24 0 24 .038 0 1 6 10 .032 1014 256 72 90 268 286
9 40 38 4 30 37 30 24 0 24 .433 0 .636 17 7 .343 1026 256 73 91 290 308
10 40 38 1 30 39 30 24 0 24 .123 0 .5 12 7 .087 997 256 73 91 312 330
11 42 38 1 30 47 30 24 0 24 .054 0 .455 10 7 .037 974 256 74 92 334 352
12 44 35 29 1 59 28 23 1 24 .211 0 .75 11 10 .149 985 256 74 92 356 374
13 48 34 26 62 27 22 -1 21 .411 0 .667 9 7 .281 968 256 75 93 378 396
14 44 35 1 27 45 28 23 -1 22 .187 0 .833 11 7 .144 1011 256 75 93 400 418
15 38 37 28 30 29 24 -1 23 .097 0 .667 9 7 .073 999 256 76 94 422 440
16 44 40 30 41 31 25 -1 24 .299 0 1 8 6 .254 1065 256 76 94 444 462
17 49 41 9 37 6 52 31 25 5 30 .599 0 -.883 1 17 18 1.5 1.844 .667 .542 .343 1101 256 76 94 466 484 -.883
18 46 40 32 2 41 30 24 2 26 .242 0 1.25 9 14 .219 1198 256 77 95 488 506
19 47 37 28 44 29 24 -1 23 -.006 0 .833 9 10 -.004 1013 256 91 109 114 132
20 60 38 28 67 29 24 -1 23 .08 0 .833 7 7 .054 880 256 92 110 136 154

Total number of rows: 4896

Table truncated, full table size 577 Kbytes.




Supplementary data files not provided

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