|
| Status |
Public on Dec 29, 2021 |
| Title |
HH18/19_Chicken_scRNA-Seq#1 |
| Sample type |
SRA |
| |
|
| Source name |
Hypothalamus
|
| Organism |
Gallus gallus |
| Characteristics |
tissue: Hypothalamus
age: Hamburger Hamilton 18/19
Sex: Mixed
|
| Extracted molecule |
total RNA |
| Extraction protocol |
scRNA-Seq following 10x V3.0 guideline
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
scRNA-Seq: Sequencing results were processed through the Cell Ranger pipeline (10x Genomics) with default parameters. Seurat V3 was used to perform downstream analysis following the standard pipeline.
Genome_build: GRCg6a
|
| |
|
| Submission date |
Apr 07, 2021 |
| Last update date |
Dec 30, 2021 |
| Contact name |
Dong Won Thomas Kim |
| E-mail(s) |
kimtho87@gmail.com
|
| Organization name |
Johns Hopkins University
|
| Department |
Neuroscience
|
| Lab |
Blackshaw lab
|
| Street address |
733 N.Broadway, MRB building (Rm 332)
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platform ID |
GPL19787 |
| Series (1) |
| GSE171649 |
Single-cell analysis of early chick hypothalamic development reveals that hypothalamic cells are induced from prethalamic-like progenitors. |
|
| Relations |
| BioSample |
SAMN18649178 |
| SRA |
SRX10533708 |
