|
Status |
Public on Dec 29, 2021 |
Title |
HH18/19_Chicken_scRNA-Seq#2 |
Sample type |
SRA |
|
|
Source name |
Hypothalamus
|
Organism |
Gallus gallus |
Characteristics |
tissue: Hypothalamus age: Hamburger Hamilton 18/19 Sex: Mixed
|
Extracted molecule |
total RNA |
Extraction protocol |
scRNA-Seq following 10x V3.0 guideline
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Data processing |
scRNA-Seq: Sequencing results were processed through the Cell Ranger pipeline (10x Genomics) with default parameters. Seurat V3 was used to perform downstream analysis following the standard pipeline. Genome_build: GRCg6a
|
|
|
Submission date |
Apr 07, 2021 |
Last update date |
Dec 30, 2021 |
Contact name |
Dong Won Thomas Kim |
E-mail(s) |
kimtho87@gmail.com
|
Organization name |
Johns Hopkins University
|
Department |
Neuroscience
|
Lab |
Blackshaw lab
|
Street address |
733 N.Broadway, MRB building (Rm 332)
|
City |
Baltimore |
State/province |
Maryland |
ZIP/Postal code |
21205 |
Country |
USA |
|
|
Platform ID |
GPL19787 |
Series (1) |
GSE171649 |
Single-cell analysis of early chick hypothalamic development reveals that hypothalamic cells are induced from prethalamic-like progenitors. |
|
Relations |
BioSample |
SAMN18649176 |
SRA |
SRX10533710 |