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Sample GSM52374 Query DataSets for GSM52374
Status Public on Jun 06, 2006
Title 114b-D5:D3
Sample type RNA
 
Channel 1
Source name AEC II on day 5
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name AEC II on day 3
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description This is a time course study of gene expression profile in type II alveolar epithelial cells isolated from normal, hyperoxia exposed (day 0) and recovering rats (day 1, 3, 5 and 7) using parallel hybridization of DNA micoarray.
 
Submission date May 24, 2005
Last update date Jun 06, 2005
Contact name Zhongming Chen
E-mail(s) zhongmi@okstate.edu
Phone 405-744-0329
URL http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
Organization name Oklahoma State University
Department Deptment of Physiological Sciences
Lab Lin Liu Lab
Street address 264 McElroy Hall
City Stillwater
State/province OK
ZIP/Postal code 74078
Country USA
 
Platform ID GPL1699
Series (1)
GSE2707 Gene expression profiles in AEC II during hyperoxia exposure and recovery

Data table header descriptions
ID_REF
VALUE LOWESS normalized log2 ratio of green channel (CH1, Cy3) vs red channel (CH2, Alexa647)
CH1_MEAN Scaled green fluorescence intensity (CH1, Cy3), percentile 5 converted to 0, percentile 99 to 1000, the rest linearly to 0~10000
CH2_MEAN Scaled red fluorescence intensity (CH2, Alexa647), percentile 5 converted to 0, percentile 99 to 1000, the rest linearly to 0~10000
X
Y
Dia.
F3 Mean
F5 Mean
F3 Mean - B3
F5 Mean - B5
B3 Mean
B5 Mean
F3 Median
F3 Median - B3
F5 Median
F5 Median - B5
B3 Median
B5 Median
F3 SD
F5 SD
B3 SD
B5 SD
Flags
B Pixels
F Pixels
F3 % Sat.
% > B3+1SD
% > B3+2SD
% > B5+1SD
% > B5+2SD
F5 % Sat.
Index
Log Ratio (5/3)
Mean of Ratios (5/3)
Median of Ratios (5/3)
Normalize
Ratio of Means (5/3)
Ratio of Medians (5/3)
Ratios SD (5/3)
Rgn Ratio (5/3)
Rgn R? (5/3)
Sum of Means
Sum of Medians

Data table
ID_REF VALUE CH1_MEAN CH2_MEAN X Y Dia. F3 Mean F5 Mean F3 Mean - B3 F5 Mean - B5 B3 Mean B5 Mean F3 Median F3 Median - B3 F5 Median F5 Median - B5 B3 Median B5 Median F3 SD F5 SD B3 SD B5 SD Flags B Pixels F Pixels F3 % Sat. % > B3+1SD % > B3+2SD % > B5+1SD % > B5+2SD F5 % Sat. Index Log Ratio (5/3) Mean of Ratios (5/3) Median of Ratios (5/3) Normalize Ratio of Means (5/3) Ratio of Medians (5/3) Ratios SD (5/3) Rgn Ratio (5/3) Rgn R? (5/3) Sum of Means Sum of Medians
AF007818 -0.61 9.256733055 37.36322391 830 23340 100 166 224 23 35 185 248 142 -1 172 -17 143 189 92 133 126 206 -50 448 80 0 15 2 12 1 0 10001 4.087 1.439 1.332 0 1.522 17 3.198 5.27 0.019 58 -18
AF027331 -0.13 21.19304673 51.17819746 1010 23340 100 220 272 72 79 182 254 151 3 231 38 148 193 164 159 113 247 -50 426 80 0 31 15 16 1 0 10002 3.663 1.243 1.414 0 1.097 12.667 4.433 7.061 0.01 151 41
AF032925 -0.81 13.39790311 48.35240742 1190 23340 100 202 306 40 70 206 320 160 -2 265 29 162 236 119 190 156 386 -50 430 80 0 13 5 8 0 0 10003 1.457 1.041 0 1.75 -14.5 4.251 4.192 0.408 110 27
AF046886 -1.09 21.19304673 74.41247115 1370 23340 100 240 376 72 153 208 297 183 15 268 45 168 223 267 449 156 332 -50 400 80 0 15 6 15 3 0 10004 1.585 1.356 1.155 0 2.125 3 4.705 1.882 0.35 225 60
S79292 -0.95 21.92384145 71.90065778 1550 23340 100 225 358 75 145 189 272 185 35 284 71 150 213 149 253 135 236 -50 426 80 0 21 11 25 7 0 10005 1.02 1.241 1.227 0 1.933 2.029 3.04 6.783 0.036 220 106
NM_053986 2.35 14.85949254 29.19983045 1730 23340 100 215 266 46 9 226 394 164 -5 229 -28 169 257 155 154 220 560 -50 419 80 0 11 3 2 0 0 10006 2.485 1.36 1.404 0 0.196 5.6 3.646 2.229 0.276 55 -33
NM_019360 -0.7 78.68223097 183.3623762 1920 23330 140 495 781 308 500 253 457 447 260 763 482 187 281 244 338 248 1072 0 550 156 0 51 16 7 0 0 10007 0.891 1.851 1.9 0 1.623 1.854 3.296 6.947 0.24 808 742
M35602 0.03 17.05187668 43.32878067 2090 23340 100 229 302 55 54 231 431 193 19 276 28 174 248 135 160 209 1239 -50 381 80 0 13 2 0 0 0 10008 0.559 1.428 1.284 0 0.982 1.474 4.762 5.975 0.233 109 47
M64391 -0.2 23.62902911 55.88784753 2270 23340 100 262 362 82 94 243 431 188 8 341 73 180 268 181 202 238 760 -50 426 80 0 18 3 0 0 0 10009 3.19 1.017 0.739 0 1.146 9.125 3.638 4.61 0.156 176 81
S48142 0.49 8.769536579 31.08369048 2450 23340 100 195 279 21 15 252 456 157 -17 231 -33 174 264 125 141 256 793 -50 426 80 0 6 0 0 0 0 10010 0.957 1.466 1.227 0 0.714 1.941 3.526 5.471 0.313 36 -50
AB050745 -0.3 10.96192072 37.99117726 2630 23340 100 235 372 30 37 282 621 187 -18 310 -25 205 335 171 266 252 1143 -50 436 80 0 10 3 1 0 0 10011 0.474 1.452 1.8 0 1.233 1.389 3.635 7.772 0.401 67 -43
NM_030838 -3.58 27.77019917 398.7503728 2820 23330 100 291 1515 99 1186 297 683 241 49 1480 1151 192 329 202 555 474 1868 0 414 80 0 8 0 10 0 0 10012 4.554 8.461 8.447 0 11.98 23.49 2.557 4.383 0.856 1285 1200
NM_017026 0.95 25.82141326 41.13094397 2990 23340 100 334 455 91 47 343 774 328 85 394 -14 243 408 190 333 385 1218 -50 414 80 0 5 1 2 0 0 10013 1.419 1.719 0 0.516 -0.165 3.657 3.986 0.493 138 71
NM_053295 -0.96 33.37295865 100.7865116 3170 23340 100 368 658 122 237 359 798 314 68 616 195 246 421 225 389 412 1241 -50 426 80 0 11 1 2 0 0 10014 1.52 2.214 1.886 0 1.943 2.868 3.305 4.428 0.4 359 263
NM_023101 -0.1 10.71832249 36.10731723 3350 23340 100 220 350 29 31 284 616 198 7 292 -27 191 319 122 221 354 1168 -50 426 80 0 0 0 0 0 0 10015 1.781 1.524 0 1.069 -3.857 4.161 4.811 0.548 60 -20
U60562 -1.29 24.11622559 90.73925807 3530 23340 100 270 475 84 205 313 611 217 31 415 145 186 270 209 335 663 1949 -50 445 80 0 1 1 1 0 0 10016 2.226 1.562 1.49 0 2.44 4.677 3.818 4.903 0.228 289 176
NM_012873 -1.36 104.0164478 358.5613589 3730 23350 100 623 1358 412 1058 306 606 477 266 1104 804 211 300 481 873 441 1334 -100 361 80 0 37 17 25 6 0 10017 1.596 2.438 2.098 0 2.568 3.023 2.469 4.278 0.404 1470 1070
M25823 0.16 19.7314573 44.89866403 3890 23340 100 270 366 66 59 322 816 237 33 312 5 204 307 175 263 529 2186 -50 398 80 0 2 0 0 0 0 10018 -2.722 1.415 1.353 0 0.894 0.152 5.078 8.834 0.562 125 38
NM_019323 0.49 26.30860974 47.09650073 4070 23340 100 278 344 93 66 273 583 250 65 302 24 185 278 177 247 327 1660 -50 426 80 0 10 1 0 0 0 10019 -1.437 0.988 1.161 0 0.71 0.369 4.038 6.517 0.564 159 89
NM_053655 4.81 10.47472425 24.80415705 4250 23340 100 231 318 28 -5 304 567 194 -9 274 -49 203 323 145 172 385 967 -50 426 80 0 3 0 0 0 0 10020 2.445 1.446 1.449 0 -0.179 5.444 3.343 3.455 0.631 23 -58

Total number of rows: 10000

Table truncated, full table size 2007 Kbytes.




Supplementary data files not provided
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