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Sample GSM523744 Query DataSets for GSM523744
Status Public on Jul 15, 2010
Title M8_salt_r2
Sample type mixed
 
Channel 1
Source name M8 High Salt
Organism Saccharomyces cerevisiae
Characteristics strain: M8
Extracted molecule total RNA
Extraction protocol Qiagen Yeast RNA extraction
Label Cy3
Label protocol Indirect total RNA labeling
 
Channel 2
Source name Progenitor DNA
Organism Saccharomyces cerevisiae
Characteristics strain: progenitor
Extracted molecule genomic DNA
Extraction protocol Qiagen Yeast RNA extraction
Label Cy5
Label protocol Indirect total RNA labeling
 
 
Hybridization protocol Standard Agilent protocols (5.7) for Agilent-015072 Yeast Oligo Microarray 4x44K G2519F
Scan protocol Standard Agilent protocols (5.7) for Agilent-015072 Yeast Oligo Microarray 4x44K G2519F
Description 251507210425_200907231211_S01_GE2_105_Dec08_RNAvgDNA_1_2
Data processing Agilent Feature Extraction version 10.5.1.1 with dye rank correlation normalization disabled.
 
Submission date Mar 18, 2010
Last update date Jul 06, 2010
Contact name Jason Funt
E-mail(s) jfunt@mit.edu
Organization name MIT
Department Biology
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9294
Series (1)
GSE20943 Determinants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations

Data table header descriptions
ID_REF
VALUE Median Cy3/Cy5 log2 intensity values across the probe set

Data table
ID_REF VALUE
A_06_P1030 -2.162055059
A_06_P1509 -4.065235785
A_06_P3385 NULL
A_06_P3352 -4.863719148
A_06_P5774 -3.304997873
A_06_P1387 -2.698017762
A_06_P1412 -4.37155546
A_06_P4104 -4.259829844
A_06_P4163 -3.417334643
A_06_P6951 -3.073694782
A_06_P3170 0.016911193
A_06_P4484 -3.174341483
A_06_P4099 -8.52112933
A_06_P4507 -2.514410139
A_06_P3923 -1.139722875
A_06_P3970 -10.3097808
A_06_P6798 -2.410841074
A_06_P5942 -8.486072265
A_06_P3096 -3.061412083
A_06_P4201 -0.362609824

Total number of rows: 6256

Table truncated, full table size 145 Kbytes.




Supplementary file Size Download File type/resource
GSM523744_251507210425_200907231211_S01_GE2_105_Dec08_RNAvgDNA_1_2.txt.gz 10.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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