This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction.
Arrays of this design have barcodes that begin with 16015072 or 2515072.
The ID column represents the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL7542.
Dubious mitochondrial open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF Q0017 [Source:SGD;Acc:S000007257] [Q0010]
Dubious mitochondrial open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF Q0010 [Source:SGD;Acc:S000007258] [Q0017]
Chr Mito from 13818-13986,16435-16470,18954-18991,20508-20984,21995-22246,23612-23746,25318-25342,26229-26701, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Subunit I of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits" [Q0045]
GO:0004129(cytochrome-c oxidase activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0005751(mitochondrial respiratory chain complex IV)|GO:0006123(mitochondrial electron transport, cytochrome c to oxygen)|GO:0006810(transport)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0020037(heme binding)|GO:0022900(electron transport chain)|GO:0046872(metal ion binding)|GO:0055114(oxidation-reduction process)|GO:0070469(respiratory chain)
Chr Mito from 13818-16322, Genome Release 64-1-1, Verified ORF, "Reverse transcriptase required for splicing of the COX1 pre-mRNA, encoded by a mobile group II intron within the mitochondrial COX1 gene" [Q0050]
GO:0003676(nucleic acid binding)|GO:0003723(RNA binding)|GO:0003964(RNA-directed DNA polymerase activity)|GO:0004129(cytochrome-c oxidase activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006278(RNA-dependent DNA replication)|GO:0006315(homing of group II introns)|GO:0006397(mRNA processing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0009507(chloroplast)|GO:0016021(integral to membrane)|GO:0020037(heme binding)|GO:0045333(cellular respiration)|GO:0055114(oxidation-reduction process)
Chr Mito from 13818-13986,16435-18830, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Reverse transcriptase required for splicing of the COX1 pre-mRNA, encoded by a mobile group II intron within the mitochondrial COX1 gene" [Q0055]
GO:0003676(nucleic acid binding)|GO:0003723(RNA binding)|GO:0003964(RNA-directed DNA polymerase activity)|GO:0004129(cytochrome-c oxidase activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006278(RNA-dependent DNA replication)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0009507(chloroplast)|GO:0016021(integral to membrane)|GO:0020037(heme binding)|GO:0055114(oxidation-reduction process)
Chr Mito from 13818-13986,16435-16470,18954-19996, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Endonuclease I-SceIII, encoded by a mobile group I intron within the mitochondrial COX1 gene" [Q0060]
GO:0003677(DNA binding)|GO:0004129(cytochrome-c oxidase activity)|GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008150(biological_process)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0020037(heme binding)|GO:0055114(oxidation-reduction process)
Chr Mito from 13818-13986,16435-16470,18954-18991,20508-21935, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Endonuclease I-SceII, encoded by a mobile group I intron within the mitochondrial COX1 gene; intron is normally spliced by the BI4p maturase but AI4p can mutate to acquire the same maturase activity" [Q0065]
GO:0003677(DNA binding)|GO:0004129(cytochrome-c oxidase activity)|GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0020037(heme binding)|GO:0055114(oxidation-reduction process)
Chr Mito from 13818-13986,16435-16470,18954-18991,20508-20984,21995-23167, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Endonuclease I-SceIV, involved in intron mobility; encoded by a mobile group I intron within the mitochondrial COX1 gene" [Q0070]
GO:0004129(cytochrome-c oxidase activity)|GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006316(movement of group I intron)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0020037(heme binding)|GO:0055114(oxidation-reduction process)
Chr Mito from 24156-24870,24906-25255, Genome Release 64-1-1, intron sequence removed, Uncharacterized ORF, "Protein of unknown function, encoded within an intron of the mitochondrial COX1 gene; translational initiation codon is predicted to be ATA rather than ATG" [Q0075]
Chr Mito from 27666-27812, Genome Release 64-1-1, Verified ORF, "Subunit 8 of the F0 sector of mitochondrial inner membrane F1-F0 ATP synthase, encoded on the mitochondrial genome; ATP8 and ATP6 mRNAs are not translated in the absence of the F1 sector of ATPase" [Q0080]
GO:0000276(mitochondrial proton-transporting ATP synthase complex, coupling factor F(o))|GO:0005739(mitochondrion)|GO:0006754(ATP biosynthetic process)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0015078(hydrogen ion transmembrane transporter activity)|GO:0015986(ATP synthesis coupled proton transport)|GO:0015992(proton transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0031966(mitochondrial membrane)|GO:0045263(proton-transporting ATP synthase complex, coupling factor F(o))|GO:0046933(hydrogen ion transporting ATP synthase activity, rotational mechanism)|GO:0046961(proton-transporting ATPase activity, rotational mechanism)
Chr Mito from 28487-29266, Genome Release 64-1-1, Verified ORF, "Mitochondrially encoded subunit a of the F0 sector of mitochondrial F1F0 ATP synthase; translation is specifically activated by Atp22p; ATP6 and ATP8 mRNAs are not translated in the absence of the F1 sector of ATPase" [Q0085]
GO:0000276(mitochondrial proton-transporting ATP synthase complex, coupling factor F(o))|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0006754(ATP biosynthetic process)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0015078(hydrogen ion transmembrane transporter activity)|GO:0015986(ATP synthesis coupled proton transport)|GO:0015992(proton transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016887(ATPase activity)|GO:0045263(proton-transporting ATP synthase complex, coupling factor F(o))|GO:0046933(hydrogen ion transporting ATP synthase activity, rotational mechanism)|GO:0046961(proton-transporting ATPase activity, rotational mechanism)
Chr Mito from 36540-36954,37723-37736,39141-39217,40841-41090,42508-42558,43297-43647, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Cytochrome b, mitochondrially encoded subunit of the ubiquinol-cytochrome c reductase complex which includes Cobp, Rip1p, Cyt1p, Cor1p, Qcr2p, Qcr6p, Qcr7p, Qcr8p, Qcr9p, and Qcr10p" [Q0105]
GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0005750(mitochondrial respiratory chain complex III)|GO:0006122(mitochondrial electron transport, ubiquinol to cytochrome c)|GO:0006810(transport)|GO:0008121(ubiquinol-cytochrome-c reductase activity)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0022900(electron transport chain)|GO:0022904(respiratory electron transport chain)|GO:0045153(electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity)|GO:0046872(metal ion binding)|GO:0070469(respiratory chain)
Chr Mito from 36540-36954,37723-38579, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Mitochondrial mRNA maturase with a role in splicing, encoded by both exon and intron sequences of partially processed COB mRNA" [Q0110]
GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0022904(respiratory electron transport chain)
Chr Mito from 36540-36954,37723-37736,39141-40265, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Mitochondrial mRNA maturase, forms a complex with Mrs1p to mediate splicing of the bI3 intron of the COB gene; encoded by both exon and intron sequences of partially processed COB mRNA" [Q0115]
GO:0000372(Group I intron splicing)|GO:0003677(DNA binding)|GO:0003723(RNA binding)|GO:0004519(endonuclease activity)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0022904(respiratory electron transport chain)
Chr Mito from 36540-36954,37723-37736,39141-39217,40841-42251, Genome Release 64-1-1, intron sequence removed, Verified ORF, "Mitochondrial mRNA maturase, forms a complex with Nam2p to mediate splicing of the bI4 intron of the COB gene; encoded by both exon and intron sequences of partially processed COB mRNA" [Q0120]
GO:0000372(Group I intron splicing)|GO:0003677(DNA binding)|GO:0003723(RNA binding)|GO:0004519(endonuclease activity)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0016020(membrane)|GO:0016491(oxidoreductase activity)|GO:0022904(respiratory electron transport chain)
F0-ATP synthase subunit c (ATPase-associated proteolipid), encoded on the mitochondrial genome; mutation confers oligomycin resistance; expression is specifically dependent on the nuclear genes AEP1 and AEP2
sgd|Q0130|ref|NM_001184366|tc|TC21865
chrM:46873-46932
Chr Mito from 46723-46953, Genome Release 64-1-1, Verified ORF, "F0-ATP synthase subunit c (ATPase-associated proteolipid), encoded on the mitochondrial genome; mutation confers oligomycin resistance; expression is specifically dependent on the nuclear genes AEP1 and AEP2" [Q0130]
GO:0000276(mitochondrial proton-transporting ATP synthase complex, coupling factor F(o))|GO:0005739(mitochondrion)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0008289(lipid binding)|GO:0015078(hydrogen ion transmembrane transporter activity)|GO:0015986(ATP synthesis coupled proton transport)|GO:0015991(ATP hydrolysis coupled proton transport)|GO:0015992(proton transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016887(ATPase activity)|GO:0031966(mitochondrial membrane)|GO:0033177(proton-transporting two-sector ATPase complex, proton-transporting domain)|GO:0045263(proton-transporting ATP synthase complex, coupling factor F(o))|GO:0046933(hydrogen ion transporting ATP synthase activity, rotational mechanism)|GO:0046961(proton-transporting ATPase activity, rotational mechanism)
Mitochondrial ribosomal protein of the small subunit, mitochondrially-encoded; polymorphic in different strains due to variation in number of AAT (asparagine) codons; translated near the mitochondrial inner membrane
sgd|Q0140|ref|NM_001184367|tc|NP263974|tc|TC18545
chrM:49896-49955
Chr Mito from 48901-50097, Genome Release 64-1-1, Verified ORF, "Mitochondrial ribosomal protein of the small subunit, mitochondrially-encoded; polymorphic in different strains due to variation in number of AAT (asparagine) codons; translated near the mitochondrial inner membrane" [Q0140]
GO:0003735(structural constituent of ribosome)|GO:0005739(mitochondrion)|GO:0005761(mitochondrial ribosome)|GO:0005763(mitochondrial small ribosomal subunit)|GO:0005840(ribosome)|GO:0006412(translation)|GO:0030529(ribonucleoprotein complex)|GO:0032543(mitochondrial translation)
Chr Mito from 61022-61729, Genome Release 64-1-1, Verified ORF, "I-SceI DNA endonuclease, encoded by the mitochondrial group I intron of the 21S_rRNA gene; mediates gene conversion that propagates the intron into intron-less copies of the 21S_rRNA gene" [Q0160]
Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data [Source:SGD;Acc:S000007280] [Q0182]
Chr Mito from 73758-74513, Genome Release 64-1-1, Verified ORF, "Subunit II of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits" [Q0250]
GO:0004129(cytochrome-c oxidase activity)|GO:0005507(copper ion binding)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0005751(mitochondrial respiratory chain complex IV)|GO:0006123(mitochondrial electron transport, cytochrome c to oxygen)|GO:0006810(transport)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0020037(heme binding)|GO:0022900(electron transport chain)|GO:0022904(respiratory electron transport chain)|GO:0046872(metal ion binding)|GO:0055114(oxidation-reduction process)|GO:0070469(respiratory chain)
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