|
| Status |
Public on Oct 25, 2010 |
| Title |
cervical cancer sample 13_I_3 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
cervical cancer sample 13_I_3
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: tissue
tissue origin: cervix
treatment: Pre-treatment
patient number: 13
tumour region: 3 (of tumour divided into 4 smaller pieces)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA isolated using Qiagen Dneasy kit
|
| Label |
Cy5
|
| Label protocol |
according to manufacturer's protocol, performed by Oxford Gene Technologies (OGT)
|
| |
|
| Channel 2 |
| Source name |
female reference (promega)
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: tissue
tissue origin: blood
treatment: none
patient number: normal reference
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA isolated using Qiagen Dneasy kit
|
| Label |
Cy3
|
| Label protocol |
according to manufacturer's protocol, performed by Oxford Gene Technologies (OGT)
|
| |
|
| |
| Hybridization protocol |
according to manufacturer's protocol, performed by Oxford Gene Technologies (OGT)
|
| Scan protocol |
Arrays were scanned using the Agilent G2505C scanner using feature extraction software version 10.5.1.1
|
| Description |
n/a
|
| Data processing |
R & Bioconductor, snapCGH, DNAcopy and CGHcall packages
|
| |
|
| Submission date |
Mar 23, 2010 |
| Last update date |
Oct 25, 2010 |
| Contact name |
Charlotte K Y Ng |
| Organization name |
University Hospital Basel
|
| Department |
Pathology
|
| Street address |
Schönbeinstrasse 40
|
| City |
Basel |
| ZIP/Postal code |
4003 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL10150 |
| Series (1) |
| GSE21025 |
DNA copy number data from the CE01 clinical study |
|
